{"id":"W3000873225","doi":"10.1093/gbe/evaa008","title":"The Genome of the Great Gerbil Reveals Species-Specific Duplication of an MHCII Gene","year":2020,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"McGill University; Universitetet i Oslo; National Science Council; H2020 European Research Council; Centers for Disease Control and Prevention; Norges Forskningsråd; Norwegian Sequencing Centre; National Natural Science Foundation of China","keywords":"Biology; Genome; Genetics; Gene; Yersinia pestis; Virology; Gerbil; Gene duplication; Virulence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002980178,0.0001069305,0.0001490237,0.00001960985,0.0001789357,0.000008477557,0.0003217077,0.0001667743,0.00001865201],"category_scores_gemma":[0.00007251339,0.00007055268,0.0000647125,0.0001474159,0.0004331997,0.000005513174,0.0001670678,0.00009602345,0.000006198568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002418174,"about_ca_system_score_gemma":0.00005047143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001325846,"about_ca_topic_score_gemma":0.00001237446,"domain_scores_codex":[0.9989588,0.0002001215,0.0002517342,0.0003011373,0.00007713136,0.0002111118],"domain_scores_gemma":[0.9992181,0.0000249922,0.0001506588,0.0004170114,0.000122303,0.00006694447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001822204,0.00001585289,0.02622676,0.00001339864,0.00002868475,1.392149e-7,0.00006759616,0.00002006997,0.972816,0.0002869717,0.00005627737,0.0002860156],"study_design_scores_gemma":[0.0002605643,0.0004538876,0.8867971,0.000002371629,0.00001164463,0.00001208117,0.00004917948,0.00004102769,0.09235188,0.0001889062,0.0197355,0.00009581583],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942586,0.004030493,0.0004664055,0.0006294727,0.00006368839,0.0002589935,0.00009544991,0.000005046506,0.0001918295],"genre_scores_gemma":[0.9981138,0.001097611,0.000136781,0.00006054444,0.0002340428,0.00001174905,0.0001808052,0.00000898244,0.0001557343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8804641,"threshold_uncertainty_score":0.2877055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01929163709392329,"score_gpt":0.2568680612054129,"score_spread":0.2375764241114896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}