{"id":"W3000923460","doi":"10.1016/j.jmoldx.2019.12.004","title":"An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues","year":2020,"lang":"en","type":"article","venue":"Journal of Molecular Diagnostics","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Centers for Disease Control and Prevention; Memorial Sloan-Kettering Cancer Center; Roche","keywords":"Genotyping; Multiplex; Genotype; Human papillomavirus; Population; Biology; Virology; Molecular biology; Medicine; Internal medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002816979,0.0001290127,0.0002147076,0.00006540676,0.00005160696,0.00001635486,0.0001779805,0.0001716335,0.000001847847],"category_scores_gemma":[0.0003647036,0.0001281318,0.00008948093,0.00008395543,0.00006879414,0.000009761534,0.00003609686,0.0001049791,2.37601e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008950782,"about_ca_system_score_gemma":0.00003076874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009247759,"about_ca_topic_score_gemma":0.00001832529,"domain_scores_codex":[0.999023,0.00009161055,0.0004635881,0.0001906474,0.00009122417,0.0001399748],"domain_scores_gemma":[0.999102,0.00004447858,0.0003865596,0.0001806007,0.0001937422,0.00009260141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008059638,0.00009610177,0.001579728,0.00003443243,0.00003421812,0.00000400434,0.0000871357,0.0002567449,0.9928171,0.0004914163,0.00004394331,0.004474591],"study_design_scores_gemma":[0.0006524796,0.001175715,0.002338784,0.00002768562,0.00004764286,0.00001573616,0.00006599348,0.0006503487,0.9924482,0.0003991347,0.002036968,0.0001413005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6494037,0.001081769,0.3490674,0.0001467255,0.00001574586,0.0002558102,0.00001571548,0.000005538602,0.000007580887],"genre_scores_gemma":[0.9792482,0.000667637,0.01950947,0.0003829755,0.00009137496,0.00003162638,0.00004304832,0.00002461953,0.00000101582],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3298446,"threshold_uncertainty_score":0.5225065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0212991435762832,"score_gpt":0.3152319458767114,"score_spread":0.2939328023004282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}