{"id":"W3000923460","doi":"10.1016/j.jmoldx.2019.12.004","title":"An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues","year":2020,"lang":"en","type":"article","venue":"Journal of Molecular Diagnostics","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Cancer Institute; Centers for Disease Control and Prevention; Memorial Sloan-Kettering Cancer Center; Roche","keywords":"Genotyping; Multiplex; Genotype; Human papillomavirus; Population; Biology; Virology; Molecular biology; Medicine; Internal medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002327186,0.001194736,0.00105382,0.002631267,0.0006663637,0.0007850867,0.001617235,0.001217942,0.001664914],"category_scores_gemma":[0.00284177,0.001157238,0.0007198389,0.0007990916,0.0007285769,0.0008156268,0.000870447,0.001429641,0.001217634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008461802,"about_ca_system_score_gemma":0.0009145074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008974556,"about_ca_topic_score_gemma":0.002093723,"domain_scores_codex":[0.9967205,0.0006806853,0.0001323894,0.001030298,0.001104014,0.0003321248],"domain_scores_gemma":[0.9983829,0.0006786332,0.0002359957,0.00020244,0.000343181,0.0001568895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006618224,0.000285839,0.003490368,0.0001543431,0.00006556958,0.00008342677,0.0001155569,0.0004414808,0.9649797,0.0004227183,0.000593135,0.02870601],"study_design_scores_gemma":[0.0001676009,0.002171887,0.02415252,0.0001022986,0.0003007322,0.002412546,0.0001001497,0.02744538,0.9324856,0.0007263579,0.009805083,0.0001299085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3875467,0.004994147,0.5908232,0.0003429376,0.000521034,0.001989212,0.003008525,0.004465244,0.006308977],"genre_scores_gemma":[0.4985806,0.002140977,0.4763636,0.0006061304,0.0002376742,0.002844768,0.004945005,0.0001837511,0.01409761],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002631267,"threshold_uncertainty_score":0.01230752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0212991435762832,"score_gpt":0.3152319458767114,"score_spread":0.2939328023004282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}