{"id":"W3001436825","doi":"10.1105/tpc.19.00780","title":"Expression Atlas of <i>Selaginella moellendorffii</i> Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots","year":2020,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Max-Planck-Gesellschaft; Nanyang Technological University","keywords":"Biology; Gene; Subfunctionalization; Selaginella; Transcriptome; Plant evolution; Gene duplication; Genetics; Secondary metabolism; Gene expression; Gene family; Evolutionary biology; Botany; Genome; Biosynthesis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008898451,0.0001132259,0.0001480476,0.00001273981,0.00006297426,0.000006927649,0.0002293519,0.00007790958,0.000004823758],"category_scores_gemma":[0.00002647145,0.0000597776,0.0000717521,0.0000620805,0.00008494521,0.000004581812,0.0001648984,0.00009915587,9.558937e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002649183,"about_ca_system_score_gemma":0.00006808568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005692428,"about_ca_topic_score_gemma":0.00001259835,"domain_scores_codex":[0.9993789,0.00005071053,0.0001621766,0.0001866925,0.0001177868,0.0001037461],"domain_scores_gemma":[0.9995344,0.00002830416,0.0001227321,0.0002234232,0.00004457224,0.00004659591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001150619,0.00002402762,0.000006861234,0.0001157141,0.00002486191,4.949504e-7,0.0008140303,0.00004044329,0.9981823,0.000214541,0.0002524487,0.0002091953],"study_design_scores_gemma":[0.0003019436,0.00009314025,0.00003299383,0.00002155486,0.00005562155,0.000005196904,0.0003929906,0.0002768922,0.9806989,0.0007431495,0.01730108,0.00007647662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831961,0.01478946,0.0006943978,0.0001463607,0.00005637306,0.0002058671,0.00003182927,0.000005897376,0.0008737319],"genre_scores_gemma":[0.9984612,0.001112021,0.0001028972,0.0001380815,0.00007139265,0.000008297596,0.00002839427,0.00001040197,0.00006729866],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01748336,"threshold_uncertainty_score":0.243766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005841539366805344,"score_gpt":0.1819786144927608,"score_spread":0.1761370751259554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}