{"id":"W3001709652","doi":"10.1186/s12866-019-1683-4","title":"Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Toronto Metropolitan University; Agriculture and Agri-Food Canada; Kingston Health Sciences Centre; Public Health Ontario; Canadian Food Inspection Agency; Queen's University","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Enterococcus faecium; Biology; Enterococcus faecalis; Microbiology; Virulence; Enterococcus; Mobile genetic elements; Plasmid; Gene; Genetics; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001314885,0.00037393,0.0003265151,0.0009905419,0.0002364873,0.0004308049,0.0001810467,0.0003007115,0.0009948967],"category_scores_gemma":[0.0003382128,0.0001167671,0.000518239,0.001318648,0.0001368589,0.0001785086,0.0004056573,0.0003007525,0.0003157363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002711179,"about_ca_system_score_gemma":0.0002141812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001531959,"about_ca_topic_score_gemma":0.001372439,"domain_scores_codex":[0.9998569,0.0000130881,0.00001207752,0.00005047475,0.00003247465,0.0000349958],"domain_scores_gemma":[0.9997876,0.00004772251,0.0000567542,0.00001115472,0.00005692435,0.00003979065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004295474,0.00007114567,0.01005818,0.0001740777,0.00004537504,0.0001485598,0.0002515892,0.0001987943,0.9838912,0.0000434991,0.00008778374,0.004600309],"study_design_scores_gemma":[0.00003494439,0.001111445,0.8302622,0.00006868557,0.0002449558,0.002220128,0.0009933553,0.002348541,0.1568816,0.0001754722,0.005628058,0.00003069313],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994766,0.0003216479,0.0005939664,0.00003127227,0.000004537235,0.00002010064,0.003660138,0.00002179574,0.000580619],"genre_scores_gemma":[0.9760234,0.0004474396,0.003767055,0.00008476999,0.000008193439,0.00006751656,0.01814914,0.0000337555,0.001418673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001531959,"threshold_uncertainty_score":0.003328264,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04393531742258255,"score_gpt":0.2791595645165582,"score_spread":0.2352242470939757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}