{"id":"W3001709652","doi":"10.1186/s12866-019-1683-4","title":"Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Toronto Metropolitan University; Agriculture and Agri-Food Canada; Kingston Health Sciences Centre; Public Health Ontario; Canadian Food Inspection Agency; Queen's University","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Enterococcus faecium; Biology; Enterococcus faecalis; Microbiology; Virulence; Enterococcus; Mobile genetic elements; Plasmid; Gene; Genetics; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00004159273,0.0003522857,0.001080343,0.00007160001,0.00005081138,0.000008657104,0.0001867764,0.0002169524,0.0003387015],"category_scores_gemma":[0.00002431482,0.0002747504,0.0002290766,0.00009937365,0.0002663423,0.00003150367,0.00009302195,0.0001577208,0.0003577432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001865372,"about_ca_system_score_gemma":0.0001737323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002701505,"about_ca_topic_score_gemma":0.0002777934,"domain_scores_codex":[0.9982086,0.0001302906,0.0006390761,0.0005600168,0.00005137887,0.0004105761],"domain_scores_gemma":[0.9989445,0.0001657425,0.0002731543,0.0003558362,0.00007937491,0.0001814391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006319964,0.0002501507,0.006933024,0.00005691384,0.0003570632,0.0000531143,0.002262361,0.00002692236,0.9814662,0.000004104603,0.002223979,0.0000461717],"study_design_scores_gemma":[0.004991915,0.001434197,0.003876424,0.0001016973,0.0001764433,0.00002648797,0.0006397465,0.0003964262,0.9631872,0.000007002337,0.02488351,0.0002790129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995553,0.0006244777,0.0004298257,0.0002494427,0.0001506094,0.0008125264,0.001846359,0.00006282848,0.0002709476],"genre_scores_gemma":[0.9942868,0.000097044,0.004005719,0.0004141086,0.0001219759,0.00001530433,0.0008112608,0.00003307152,0.0002146786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02265953,"threshold_uncertainty_score":0.9999705,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04393531742258255,"score_gpt":0.2791595645165582,"score_spread":0.2352242470939757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}