{"id":"W3002914797","doi":"10.3390/pathogens9020081","title":"Tools for Molecular Epidemiology of Streptococcus suis","year":2020,"lang":"en","type":"review","venue":"Pathogens","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Université de Montréal; Toronto Public Health","funders":"Kasetsart University Research and Development Institute; Kasetsart University","keywords":"Streptococcus suis; Multilocus sequence typing; Biology; Whole genome sequencing; Disease; Phylogenetic tree; Outbreak; Molecular epidemiology; Identification (biology); Molecular diagnostics; Typing; Genetics; Population; Computational biology; Genome; Microbiology; Genotype; Virology; Gene; Medicine; Virulence; Environmental health; Pathology; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001123882,0.001014322,0.001519555,0.003858516,0.000199966,0.001080596,0.0007826512,0.001389754,0.005886803],"category_scores_gemma":[0.001804229,0.0003543423,0.0009174073,0.002243845,0.0005568447,0.001457958,0.0008025361,0.00219653,0.003659591],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006478599,"about_ca_system_score_gemma":0.001313409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00128863,"about_ca_topic_score_gemma":0.00123931,"domain_scores_codex":[0.9995742,0.00009914255,0.00006549818,0.00006333231,0.0001600216,0.00003769927],"domain_scores_gemma":[0.9991615,0.0004725471,0.0001099228,0.00003073995,0.0001837619,0.00004154362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004945149,0.00006010631,0.000218067,0.028604,0.0001219041,0.0001172062,0.00004828209,0.0002568069,0.002664247,0.004865094,0.02449077,0.9385042],"study_design_scores_gemma":[0.00001168143,0.00008353699,0.0008276593,0.006204317,0.0001402072,0.0006662055,0.00003740676,0.00006565691,0.0007091075,0.001554047,0.9896792,0.00002104096],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006142408,0.998353,0.0002523453,0.0002270887,0.0002318118,0.000008224762,0.00003510807,0.00001056788,0.0008205023],"genre_scores_gemma":[0.000419177,0.9982936,0.0004852157,0.0001741772,0.0001162473,0.000010301,0.00006464846,0.00000237784,0.0004341317],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005886803,"threshold_uncertainty_score":0.01969326,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1943648884204805,"score_gpt":0.4366489051719627,"score_spread":0.2422840167514822,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}