{"id":"W3003940285","doi":"10.3389/fgene.2019.01384","title":"Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies","year":2020,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; University of British Columbia; Canadian Forest Service; Université Laval","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Office of Science; Oak Ridge National Laboratory; Joint Genome Institute; Compute Canada; U.S. Department of Energy","keywords":"Biology; Genome-wide association study; Genetics; Heritability; Genetic variation; Missing heritability problem; Genome; Genetic diversity; Genetic association; Populus trichocarpa; Germplasm; Genomics; Genetic architecture; Evolutionary biology; Population; Quantitative trait locus; Gene; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001617816,0.0006253169,0.0008236113,0.002249121,0.0009844674,0.001145093,0.0006110133,0.0004991776,0.002433602],"category_scores_gemma":[0.003673874,0.0002427773,0.001212955,0.001936551,0.0002691649,0.0002918945,0.001032898,0.0007590769,0.0006077784],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003113375,"about_ca_system_score_gemma":0.0004322895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002683952,"about_ca_topic_score_gemma":0.005655018,"domain_scores_codex":[0.9986499,0.0002621796,0.0001021186,0.0005455829,0.0003080972,0.0001320771],"domain_scores_gemma":[0.9986437,0.0006431652,0.0001941151,0.0001478765,0.0002316662,0.0001394864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001770848,0.0002690286,0.1432666,0.0008040656,0.001934109,0.001881755,0.001069245,0.00770837,0.7588242,0.001177193,0.003351,0.07794355],"study_design_scores_gemma":[0.0002640599,0.000513113,0.8662623,0.0001562638,0.001611596,0.002255211,0.000471074,0.0228848,0.07814612,0.001837382,0.02542648,0.0001715714],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.958928,0.001060138,0.02283285,0.000136568,0.00005098848,0.0001230229,0.01507119,0.0005534618,0.001243814],"genre_scores_gemma":[0.8983455,0.0004334036,0.04966157,0.0002169575,0.00004200677,0.0002662181,0.0498766,0.0003780929,0.0007797203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002683952,"threshold_uncertainty_score":0.008555949,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04855855256399511,"score_gpt":0.2699776608008668,"score_spread":0.2214191082368717,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}