{"id":"W3004548709","doi":"10.3389/fgene.2019.01359","title":"Transcriptome Changes of Mycobacterium marinum in the Process of Resuscitation From Hypoxia-Induced Dormancy","year":2020,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Mycobacterium marinum; Transcriptome; Gene; Dormancy; Mycobacterium tuberculosis; Genetics; Gene expression; Microbiology; Tuberculosis; Mycobacterium; Bacteria; Medicine; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000190037,0.0001118207,0.0003277922,0.0001717097,0.00001075833,0.000008319271,0.0002206464,0.00009579755,0.00002708841],"category_scores_gemma":[0.0001801893,0.00008828677,0.00004622653,0.000547879,0.00005938992,0.00004219407,0.0000222322,0.0001920422,0.000001447582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002490612,"about_ca_system_score_gemma":0.00009097473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001000858,"about_ca_topic_score_gemma":0.00006706019,"domain_scores_codex":[0.9987714,0.00009639472,0.0003308039,0.0001967347,0.0003832066,0.0002214229],"domain_scores_gemma":[0.9994457,0.00006227094,0.00009332496,0.0002178779,0.00009284877,0.00008793337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009849874,0.000239097,0.7298193,0.0007348825,0.00004978644,0.0000282548,0.01500185,0.00001219205,0.2431434,0.000008773231,0.002326387,0.007651111],"study_design_scores_gemma":[0.001868501,0.000757854,0.8961084,0.0001736009,0.00004801002,7.756807e-7,0.003418563,0.0006142155,0.09589128,0.0002730156,0.0007388265,0.0001069263],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943505,0.000956927,0.0001704038,0.003287739,0.0002187286,0.0005193259,0.00006997636,0.000007663376,0.0004187683],"genre_scores_gemma":[0.9959114,0.0009436666,0.002521665,0.0003810161,0.0001166143,0.00004395029,0.00006126361,0.00001419305,0.000006220444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1662892,"threshold_uncertainty_score":0.360023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03029414689434207,"score_gpt":0.2835448776889823,"score_spread":0.2532507307946402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}