{"id":"W3004555831","doi":"10.1016/j.celrep.2020.01.085","title":"Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region","year":2020,"lang":"en","type":"article","venue":"Cell Reports","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Child Health and Human Development; Oxford Martin School, University of Oxford; Horizon 2020; Medical Research Council; Ministério da Saúde; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Eidgenössische Technische Hochschule Zürich; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Branco Weiss Fellowship – Society in Science; Ministry of Health -Singapore; Eunice Kennedy Shriver National Institute of Child Health and Human Development; European Commission; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Fonds De La Recherche Scientifique - FNRS; Pan American Health Organization; Fundação de Amparo à Pesquisa do Estado de São Paulo; Oxford Nanopore Technologies; International Development Research Centre; Wellcome Trust; Google","keywords":"Zika virus; Amazon rainforest; Outbreak; Virology; Transmission (telecommunications); Biology; Virus; Geography; Phylogenetic tree; Epidemiology; Genetics; Medicine; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003313733,0.00007154374,0.0002817797,0.00001208743,0.00001400035,0.00000381951,0.00003656002,0.00004608486,0.00002295202],"category_scores_gemma":[0.0003422291,0.00004286198,0.00006488121,0.00006435511,0.00004398225,0.00001016694,0.00002249673,0.00009333238,0.000001696396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007959263,"about_ca_system_score_gemma":0.00003044795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006411806,"about_ca_topic_score_gemma":0.00000633796,"domain_scores_codex":[0.9991885,0.00008184015,0.0003155477,0.0002132998,0.0000881492,0.0001126816],"domain_scores_gemma":[0.999415,0.0001082542,0.0001564096,0.000220243,0.00001971585,0.00008040077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002393106,0.00008803909,0.9625354,0.0001161491,0.00001009442,0.002735297,0.0002392129,0.00001583492,0.02714181,0.00006002404,0.003089281,0.003729561],"study_design_scores_gemma":[0.0004025559,0.0001899686,0.989651,0.00001543005,0.00002583085,0.0001779256,0.00009592918,0.0003328527,0.000472025,0.000165708,0.008414429,0.0000563763],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916381,0.003603577,0.00005713138,0.002433161,0.00003333145,0.0002534752,0.000001071335,0.00001071977,0.001969493],"genre_scores_gemma":[0.9973751,0.0003381824,0.00002024681,0.002103323,0.00009496655,0.000008999463,0.00000706482,0.000005225109,0.00004684603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02711558,"threshold_uncertainty_score":0.1747861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02902440440707513,"score_gpt":0.2619270877806943,"score_spread":0.2329026833736192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}