{"id":"W3004555831","doi":"10.1016/j.celrep.2020.01.085","title":"Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region","year":2020,"lang":"en","type":"article","venue":"Cell Reports","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Child Health and Human Development; Oxford Martin School, University of Oxford; Horizon 2020; Medical Research Council; Ministério da Saúde; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Eidgenössische Technische Hochschule Zürich; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Branco Weiss Fellowship – Society in Science; Ministry of Health -Singapore; Eunice Kennedy Shriver National Institute of Child Health and Human Development; European Commission; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Fonds De La Recherche Scientifique - FNRS; Pan American Health Organization; Fundação de Amparo à Pesquisa do Estado de São Paulo; Oxford Nanopore Technologies; International Development Research Centre; Wellcome Trust; Google","keywords":"Zika virus; Amazon rainforest; Outbreak; Virology; Transmission (telecommunications); Biology; Virus; Geography; Phylogenetic tree; Epidemiology; Genetics; Medicine; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002491344,0.0001196173,0.000128887,0.00105563,0.0002672228,0.0004181369,0.0001946123,0.0001579534,0.0004064536],"category_scores_gemma":[0.0008676258,0.0001217062,0.0001259226,0.0008629823,0.0002770498,0.0001639746,0.0003107962,0.0001676527,0.00008546656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004035912,"about_ca_system_score_gemma":0.0003943004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02182462,"about_ca_topic_score_gemma":0.02403591,"domain_scores_codex":[0.9997469,0.00005037052,0.00002153397,0.00006906773,0.00005902698,0.00005311356],"domain_scores_gemma":[0.9996136,0.00003887585,0.0001841002,0.00002465972,0.00008871486,0.00005010912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006473812,0.0000306615,0.9493056,0.00007011939,0.00002772142,0.0003770364,0.001898989,0.0001141063,0.03709168,0.0002327453,0.0001899362,0.01059675],"study_design_scores_gemma":[0.00000382144,0.00005063743,0.9947296,0.00001962961,0.00001790212,0.0005900607,0.001495339,0.0002782051,0.001430818,0.00005666317,0.001322714,0.000004544369],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997858,0.0003254981,0.0002355825,0.00008813004,0.00000247171,0.00002318088,0.0006370441,0.000006183842,0.0008238787],"genre_scores_gemma":[0.9985067,0.0002591772,0.0005693343,0.00003905191,0.00000348389,0.000008041637,0.0005258161,0.000002095583,0.00008622576],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02182462,"threshold_uncertainty_score":0.04339516,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02902440440707513,"score_gpt":0.2619270877806943,"score_spread":0.2329026833736192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}