{"id":"W3004560238","doi":"10.3138/jammi-2019-0021","title":"<i>Legionella quinlivanii</i> strain isolated from a human: A case report and whole genome sequencing analysis","year":2020,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Public Health Agency of Canada; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; McGill University; Université de Sherbrooke; Hôpital du Sacré-Cœur de Montréal; Institut National de Santé Publique du Québec","funders":"","keywords":"Strain (injury); Effector; Whole genome sequencing; Biology; Legionella; Genome; Gene; Microbiology; 16S ribosomal RNA; Bacteria; Genetics; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001187722,0.001079724,0.0004973725,0.001195563,0.001991084,0.001082903,0.0006593221,0.002250942,0.002104016],"category_scores_gemma":[0.0006398518,0.0005050775,0.000380257,0.000716849,0.001051169,0.0005865219,0.0004783593,0.001175736,0.0006703023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002273002,"about_ca_system_score_gemma":0.0009532334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1289042,"about_ca_topic_score_gemma":0.1195392,"domain_scores_codex":[0.9997495,0.00001347167,0.00001786813,0.00008140083,0.00004927444,0.00008853022],"domain_scores_gemma":[0.9994844,0.000107057,0.00009767074,0.00003151042,0.000101338,0.0001778753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.00009618358,0.00008382116,0.04164359,0.0001649772,0.00001844699,0.9353997,0.001280287,0.0001533048,0.01452534,0.0002789893,0.002547331,0.003808097],"study_design_scores_gemma":[0.00001247873,0.0001461889,0.08226822,0.00009593429,0.00005503524,0.900947,0.001945109,0.0007144031,0.006642422,0.000177705,0.006941267,0.00005414331],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820601,0.001782582,0.002283831,0.002218343,0.0001572647,0.000162695,0.001214206,0.0001355694,0.009985407],"genre_scores_gemma":[0.9938052,0.0008928764,0.001407229,0.0006908604,0.0001397687,0.00001449565,0.0005011098,0.00003361856,0.002514881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1289042,"threshold_uncertainty_score":0.2563078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007151029006984517,"score_gpt":0.2337876926776951,"score_spread":0.2266366636707106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}