{"id":"W3004785320","doi":"10.1186/s12864-019-6431-5","title":"Topology and expressed repertoire of the Felis catus T cell receptor loci","year":2020,"lang":"en","type":"article","venue":"BMC Genomics","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Chulalongkorn University; Agence Nationale de la Recherche","keywords":"Biology; Felis catus; Repertoire; Genetics; Evolutionary biology; Computational biology; Topology (electrical circuits); Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007627309,0.0001634644,0.0003046652,0.00002506845,0.0001606516,0.000006322413,0.0003670414,0.0003294695,0.0003632837],"category_scores_gemma":[0.00005725926,0.0001222692,0.00009960504,0.00008189735,0.0005053775,0.00002486818,0.0003130139,0.0002783525,0.0001845285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002264961,"about_ca_system_score_gemma":0.0001069853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001411947,"about_ca_topic_score_gemma":0.00003339918,"domain_scores_codex":[0.9988852,0.0001949115,0.0002987205,0.0003182542,0.00001805562,0.0002848615],"domain_scores_gemma":[0.9992765,0.0001113706,0.0001720552,0.0003723891,0.00004166926,0.00002604502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001562445,0.00004994405,0.001810392,0.00003759092,0.0000389995,6.39079e-7,0.001544187,0.000007433219,0.9847702,0.0001825733,0.01077516,0.0006266891],"study_design_scores_gemma":[0.0008726097,0.0001218112,0.0002377769,0.000003349594,0.00002998084,0.0000127979,0.0006629527,0.000004790325,0.7759706,0.0000669414,0.2218996,0.0001167814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897866,0.006229142,0.00007069991,0.001800061,0.0006480687,0.0002116929,0.00005582656,0.00003520145,0.001162693],"genre_scores_gemma":[0.9954884,0.0003587676,0.0003331371,0.0006772261,0.00006584531,0.000008627156,0.00003717177,0.00001965377,0.003011176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2111244,"threshold_uncertainty_score":0.4985992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01572083719590083,"score_gpt":0.1984401513842148,"score_spread":0.1827193141883139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}