{"id":"W3004897498","doi":"10.1038/s42003-019-0741-7","title":"Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":190,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Prostate Cancer Canada; Université de Montréal; Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Princess Margaret Cancer Centre; University of Calgary; Vector Institute; McGill University and Génome Québec Innovation Centre; Toronto General Hospital; University Health Network; University of Toronto; BC Cancer Agency; SickKids Foundation; Genome Canada; Canada's Michael Smith Genome Sciences Centre; University of Ottawa; McGill University; Simon Fraser University; Institute of Cancer Research; Ontario Institute for Cancer Research","funders":"National Institute of Environmental Health Sciences; Inselspital, Universitätsspital Bern; Deutsches Krebsforschungszentrum; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Francis Crick Institute; National Cancer Institute; National Science Foundation","keywords":"Long non-coding RNA; Carcinogenesis; Cancer; Biology; Computational biology; Census; Genetics; Cancer research; Evolutionary biology; RNA; Gene; Medicine; Environmental health; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003836603,0.0002532056,0.0005119311,0.001227091,0.0004083356,0.0005627337,0.0002718831,0.000259476,0.001804506],"category_scores_gemma":[0.001194449,0.0001981083,0.0004644793,0.001168769,0.0002802564,0.0003193476,0.0007811673,0.0004076514,0.0006642304],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003491509,"about_ca_system_score_gemma":0.0006048731,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002158213,"about_ca_topic_score_gemma":0.006490987,"domain_scores_codex":[0.9996171,0.00002724925,0.00003032482,0.0001811523,0.0001084487,0.00003577262],"domain_scores_gemma":[0.9991479,0.0002372447,0.0002160735,0.0001359543,0.00009873961,0.0001641404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001040646,0.00004639437,0.1287427,0.0007517219,0.0004168603,0.0007131958,0.0003319313,0.004579269,0.8172552,0.002477923,0.003942193,0.03970197],"study_design_scores_gemma":[0.0001046028,0.0004072796,0.689485,0.0001232095,0.0006840362,0.00386349,0.0003615906,0.03011353,0.1969435,0.007677345,0.07005014,0.0001862121],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9468406,0.002122208,0.01431913,0.0002314154,0.00004782254,0.00002787682,0.03226188,0.001307835,0.002841251],"genre_scores_gemma":[0.9354476,0.001055584,0.01161498,0.00028671,0.00002702877,0.00005132795,0.04956699,0.0004365889,0.001513227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002158213,"threshold_uncertainty_score":0.006036639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1966597402385097,"score_gpt":0.4101952472040844,"score_spread":0.2135355069655747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}