{"id":"W3004897498","doi":"10.1038/s42003-019-0741-7","title":"Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":190,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Prostate Cancer Canada; Université de Montréal; Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Princess Margaret Cancer Centre; University of Calgary; Vector Institute; McGill University and Génome Québec Innovation Centre; Toronto General Hospital; University Health Network; University of Toronto; BC Cancer Agency; SickKids Foundation; Genome Canada; Canada's Michael Smith Genome Sciences Centre; University of Ottawa; McGill University; Simon Fraser University; Institute of Cancer Research; Ontario Institute for Cancer Research","funders":"National Institute of Environmental Health Sciences; Inselspital, Universitätsspital Bern; Deutsches Krebsforschungszentrum; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Francis Crick Institute; National Cancer Institute; National Science Foundation","keywords":"Long non-coding RNA; Carcinogenesis; Cancer; Biology; Computational biology; Census; Genetics; Cancer research; Evolutionary biology; RNA; Gene; Medicine; Environmental health; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003087615,0.0001024227,0.0001754365,0.00006933464,0.00009302424,0.000006995986,0.0005437236,0.0001635241,0.00002332166],"category_scores_gemma":[0.0008826609,0.0001114944,0.00007873021,0.0002678319,0.0001643113,0.000005783542,0.0003235113,0.0001327065,0.000002358842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005783693,"about_ca_system_score_gemma":0.0002030496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001677177,"about_ca_topic_score_gemma":0.0006917331,"domain_scores_codex":[0.9989123,0.0002128557,0.0003331951,0.0002771272,0.00006750558,0.000196977],"domain_scores_gemma":[0.9986408,0.0001937637,0.0001490382,0.0006501518,0.0003053,0.00006096443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00023788,0.00003573882,0.006935782,0.00004672469,0.00005046765,3.784524e-7,0.00004905335,0.0003952834,0.9843262,0.001243233,0.000518465,0.006160727],"study_design_scores_gemma":[0.002544414,0.0009376998,0.02583877,0.0002608163,0.00009363423,0.00001518328,0.0002357746,0.02054905,0.9052529,0.001038659,0.04265556,0.000577492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4448606,0.0519659,0.4721655,0.02756287,0.000410099,0.00218639,0.0003484913,0.00004465803,0.0004554036],"genre_scores_gemma":[0.9893252,0.004961595,0.004115033,0.000682956,0.00009355938,0.000331843,0.0004352176,0.00001770817,0.00003688002],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.5444645,"threshold_uncertainty_score":0.454661,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1966597402385097,"score_gpt":0.4101952472040844,"score_spread":0.2135355069655747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}