{"id":"W3004901913","doi":"10.1371/journal.pbio.3000597","title":"Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation","year":2020,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"FP7 Ideas: European Research Council; Science and Technology Facilities Council; Exploratory Research for Advanced Technology; Natural Environment Research Council; Engineering and Physical Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Dell EMC; Universidad del Rosario; Isaac Newton Trust; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Biotechnology and Biological Sciences Research Council; Austrian Science Fund; CHIST-ERA; Agence Nationale de la Recherche; National Science Foundation; University of Cambridge; Sight Research UK; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Biology; Mimicry; Butterfly; Evolutionary biology; Genetics; Adaptation (eye); Variation (astronomy); Genetic variation; Adaptive radiation; Computational biology; Zoology; Gene; Phylogenetics; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000386543,0.0001039668,0.0001190566,0.00004219517,0.00003858423,0.000008353039,0.00007086117,0.0002091835,0.00002045479],"category_scores_gemma":[0.00008605898,0.0001041016,0.00002273638,0.00009140886,0.00004064443,0.00000321992,0.00005101734,0.0001026599,0.000007565477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001193875,"about_ca_system_score_gemma":0.00002346936,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001365763,"about_ca_topic_score_gemma":0.000008624776,"domain_scores_codex":[0.999336,0.00006695619,0.0001162882,0.0003118884,0.00004168094,0.0001271815],"domain_scores_gemma":[0.999754,0.00001619097,0.00006959684,0.00006757398,0.00004214632,0.00005053414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004832747,0.000054182,0.02017052,0.000008423203,0.00007465691,8.34275e-7,0.0007193492,0.0002209852,0.9733231,0.0005344826,0.0002662533,0.004143918],"study_design_scores_gemma":[0.005245611,0.004429835,0.6243286,0.00002048994,0.00007876273,0.000007452424,0.0003014651,0.01508977,0.3424201,0.0009499756,0.006435407,0.0006926166],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960318,0.0001086043,0.002279251,0.001112898,0.00004424969,0.0001789739,0.00006282459,0.000009207723,0.0001721599],"genre_scores_gemma":[0.9970387,0.00003275681,0.0007375309,0.001748253,0.0001731221,0.000007027144,0.0002478148,0.000006657686,0.000008141812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6309031,"threshold_uncertainty_score":0.424514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02050987254051286,"score_gpt":0.2257340295808366,"score_spread":0.2052241570403237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}