{"id":"W3005347555","doi":"10.3390/pathogens9020097","title":"Detection of Helicobacter pylori Microevolution and Multiple Infection from Gastric Biopsies by Housekeeping Gene Amplicon Sequencing","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Universitat de Barcelona; Fundació la Marató de TV3","keywords":"Housekeeping gene; Amplicon; Biology; Helicobacter pylori; Gene; Housekeeping; Microevolution; Polymerase chain reaction; Microbiology; DNA sequencing; Genetics; Medicine; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007611416,0.0003475823,0.0004501853,0.001605127,0.0002387296,0.000446346,0.0002576962,0.0004210147,0.0006271785],"category_scores_gemma":[0.001683528,0.0002020258,0.0002813052,0.0008547396,0.0003643019,0.000310482,0.0004005908,0.0002806457,0.0001718105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001102453,"about_ca_system_score_gemma":0.00013473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004025969,"about_ca_topic_score_gemma":0.0009358248,"domain_scores_codex":[0.999258,0.0001499958,0.00007392065,0.0001984303,0.0002184774,0.0001011788],"domain_scores_gemma":[0.9990559,0.0003171162,0.0003162207,0.00006430133,0.0001650289,0.00008140504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004189859,0.00006691325,0.07920983,0.0002291288,0.00007159197,0.0005749384,0.0004916863,0.00009744198,0.9002669,0.00006026855,0.0000416917,0.01847059],"study_design_scores_gemma":[0.00003283511,0.001646578,0.6172481,0.0001157404,0.0002900053,0.006439881,0.001223719,0.002825442,0.3672866,0.0003385333,0.002513667,0.00003875239],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990816,0.001695764,0.006550301,0.00003332163,0.00001659881,0.00005869712,0.0002501614,0.00002936137,0.0005496782],"genre_scores_gemma":[0.9793002,0.0009526951,0.01869208,0.00005983281,0.00002570998,0.00005958193,0.0005333505,0.00001783463,0.0003588492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001605127,"threshold_uncertainty_score":0.00402534,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02387130696803571,"score_gpt":0.2261903208952561,"score_spread":0.2023190139272204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}