{"id":"W3005347555","doi":"10.3390/pathogens9020097","title":"Detection of Helicobacter pylori Microevolution and Multiple Infection from Gastric Biopsies by Housekeeping Gene Amplicon Sequencing","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Universitat de Barcelona; Fundació la Marató de TV3","keywords":"Housekeeping gene; Amplicon; Biology; Helicobacter pylori; Gene; Housekeeping; Microevolution; Polymerase chain reaction; Microbiology; DNA sequencing; Genetics; Medicine; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001000951,0.0002170893,0.0003953533,0.0001282282,0.0001130961,0.00001281504,0.00003877888,0.000161119,0.000006581015],"category_scores_gemma":[0.0002828638,0.000220947,0.00008307929,0.0003022313,0.0001106678,0.0001206635,0.00007784857,0.0002560003,0.00001394227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001542982,"about_ca_system_score_gemma":0.00002279545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005391676,"about_ca_topic_score_gemma":0.00007833551,"domain_scores_codex":[0.998657,0.00008342501,0.0003941786,0.0004217336,0.0001398364,0.0003038487],"domain_scores_gemma":[0.9992666,0.00006659299,0.0001935789,0.0001676599,0.0001455925,0.0001599847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001277297,0.00002104151,0.3563136,0.00003412693,0.0001401499,0.000005525338,0.0005950217,0.00001025216,0.6405742,1.5117e-7,0.00003473304,0.002143427],"study_design_scores_gemma":[0.001790138,0.0006665526,0.5043334,0.00007407571,0.0003471843,0.0000892418,0.0001815389,0.001592384,0.4902365,0.000004841301,0.0005182358,0.0001658625],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870156,0.000916674,0.01079351,0.0004432138,0.0001732867,0.0003095497,0.0001772549,0.0001596062,0.00001126909],"genre_scores_gemma":[0.9973537,0.0007596641,0.001028709,0.0004892208,0.0002163429,0.00001518428,0.00009828678,0.00003542686,0.000003496824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1503377,"threshold_uncertainty_score":0.9009956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02387130696803571,"score_gpt":0.2261903208952561,"score_spread":0.2023190139272204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}