{"id":"W3005400930","doi":"10.1038/s41588-019-0558-9","title":"The landscape of viral associations in human cancers","year":2020,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":403,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; BC Cancer Agency; University of British Columbia; Prostate Cancer Canada; Simon Fraser University; University of Ottawa; McGill University; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Princess Margaret Cancer Centre; University of Calgary; Vector Institute; University of Toronto; McGill University and Génome Québec Innovation Centre; Toronto General Hospital; University Health Network; Genome Canada; Canada's Michael Smith Genome Sciences Centre; Hospital for Sick Children; Université de Montréal; Institute of Cancer Research; Ontario Institute for Cancer Research","funders":"Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie – Hans-Knöll-Institut; National Institute of Environmental Health Sciences; National Cancer Institute; Biotechnology and Biological Sciences Research Council; Bundesministerium für Bildung und Forschung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Leibniz-Gemeinschaft; Government of Ontario; Cancer Research UK; National Science Foundation; Ontario Institute for Cancer Research; Deutsches Zentrum für Infektionsforschung; Deutsches Krebsforschungszentrum; Francis Crick Institute","keywords":"Biology; APOBEC; Transcriptome; Hepatitis B virus; Genome; Virology; Virus; Cancer; Merkel cell polyomavirus; Endogenous retrovirus; Genetics; Gene; Cancer research; Carcinoma; Merkel cell carcinoma; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00116366,0.0002756289,0.0005930032,0.001984832,0.0005283114,0.001819153,0.0002525455,0.0004363929,0.001470342],"category_scores_gemma":[0.00291417,0.0002640369,0.0005308373,0.002366264,0.000390969,0.0006728772,0.001127255,0.0005528756,0.000396678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004791645,"about_ca_system_score_gemma":0.0005211888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001727298,"about_ca_topic_score_gemma":0.003830353,"domain_scores_codex":[0.998584,0.0003592522,0.0000743819,0.0006513423,0.0002154786,0.0001155144],"domain_scores_gemma":[0.9987256,0.0005867459,0.0003046729,0.000156392,0.0001258133,0.0001007482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005721435,0.00005213544,0.7991278,0.001292991,0.001731027,0.0005405404,0.0007587181,0.005983677,0.07882378,0.005007403,0.003696868,0.102413],"study_design_scores_gemma":[0.00003106554,0.0001903033,0.8897538,0.0003540538,0.0008637793,0.002459904,0.001364821,0.01398752,0.01101596,0.02407185,0.0558238,0.00008312388],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9175495,0.04200098,0.01771136,0.001414549,0.00007685217,0.00004961812,0.01680163,0.0003131301,0.004082349],"genre_scores_gemma":[0.9675242,0.007849732,0.008222627,0.000582307,0.00007235378,0.00006275915,0.01476594,0.0001627387,0.0007574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001984832,"threshold_uncertainty_score":0.00615412,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009924264291170564,"score_gpt":0.2819074765132694,"score_spread":0.2719832122220989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}