{"id":"W3005400930","doi":"10.1038/s41588-019-0558-9","title":"The landscape of viral associations in human cancers","year":2020,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":403,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; BC Cancer Agency; University of British Columbia; Prostate Cancer Canada; Simon Fraser University; University of Ottawa; McGill University; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Princess Margaret Cancer Centre; University of Calgary; Vector Institute; University of Toronto; McGill University and Génome Québec Innovation Centre; Toronto General Hospital; University Health Network; Genome Canada; Canada's Michael Smith Genome Sciences Centre; Hospital for Sick Children; Université de Montréal; Institute of Cancer Research; Ontario Institute for Cancer Research","funders":"Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie – Hans-Knöll-Institut; National Institute of Environmental Health Sciences; National Cancer Institute; Biotechnology and Biological Sciences Research Council; Bundesministerium für Bildung und Forschung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Leibniz-Gemeinschaft; Government of Ontario; Cancer Research UK; National Science Foundation; Ontario Institute for Cancer Research; Deutsches Zentrum für Infektionsforschung; Deutsches Krebsforschungszentrum; Francis Crick Institute","keywords":"Biology; APOBEC; Transcriptome; Hepatitis B virus; Genome; Virology; Virus; Cancer; Merkel cell polyomavirus; Endogenous retrovirus; Genetics; Gene; Cancer research; Carcinoma; Merkel cell carcinoma; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007480664,0.00006480668,0.0001444268,0.00002288955,0.00006315172,0.000007603836,0.00008451578,0.0001869795,0.00001917991],"category_scores_gemma":[0.0001139158,0.00004879687,0.00005694407,0.000242263,0.00002986584,0.000009754116,0.00001782444,0.000400317,0.000001634837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009758846,"about_ca_system_score_gemma":0.0001597375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004728512,"about_ca_topic_score_gemma":0.0004333388,"domain_scores_codex":[0.999369,0.00001878764,0.0001598221,0.0001037526,0.0002005861,0.0001480905],"domain_scores_gemma":[0.9996771,0.00002441282,0.00008190065,0.0001005836,0.00006400292,0.0000519546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001567437,0.00007191565,0.9071241,0.00005249026,0.0001781121,0.000009803199,0.002361224,0.0009394729,0.006436138,0.000894888,0.07466236,0.007112731],"study_design_scores_gemma":[0.00737166,0.001101351,0.9249518,0.00006019577,0.0002178173,0.00000105672,0.002099002,0.002293624,0.006385249,0.001378668,0.05383436,0.0003052086],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770286,0.007322401,0.000004264942,0.006201213,0.0001376926,0.0001802733,0.0000316378,0.00001740356,0.009076535],"genre_scores_gemma":[0.9972656,0.0005006529,0.00005711338,0.001895073,0.0001217585,0.000004606165,0.00002466977,0.000010104,0.0001204255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02082799,"threshold_uncertainty_score":0.1989879,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009924264291170564,"score_gpt":0.2819074765132694,"score_spread":0.2719832122220989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}