{"id":"W3005463128","doi":"10.1139/cjb-2019-0109","title":"Supermatrix analyses and molecular clock rooting of Fabales: Exploring the effects of outgroup choice and long branch attraction on topology","year":2020,"lang":"en","type":"article","venue":"Botany","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Supermatrix; Outgroup; Biology; Taxon; Phylogenetic tree; Botany; Molecular clock; Phylogenetics; Fabaceae; Mathematics; Genetics; Paleontology; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004185987,0.00006330774,0.0001402541,0.000003552628,0.00008246153,0.000008677053,0.00004745028,0.0000215458,0.000003073642],"category_scores_gemma":[0.0001220746,0.0000220544,0.00003167752,0.00009058333,0.00005042061,0.00004624121,0.00004082356,0.00005026413,5.015457e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001973861,"about_ca_system_score_gemma":6.448017e-7,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001635757,"about_ca_topic_score_gemma":0.0002610716,"domain_scores_codex":[0.9995993,0.0000361967,0.00009898812,0.0001118705,0.00006903295,0.00008459472],"domain_scores_gemma":[0.999493,0.0004088651,0.00004864885,0.00001029535,0.00001344174,0.00002575679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001298166,0.000009123622,0.1372019,0.00003140836,0.00001777519,0.000002201829,0.00011838,8.826864e-7,0.8549288,0.00007340209,0.000006386098,0.007596732],"study_design_scores_gemma":[0.00007139654,0.0003136996,0.9484712,0.00003235488,0.0000221457,0.000002562682,0.0002534912,0.0000212498,0.05060625,0.00001377278,0.000145142,0.00004666172],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968954,0.002375245,0.000003398098,0.000566581,0.00002037639,0.00006870351,0.000004726792,0.000009644028,0.00005590687],"genre_scores_gemma":[0.9994795,0.000354798,0.000004944287,0.00008700366,0.00006664011,0.000002903713,4.841115e-7,4.00766e-7,0.000003269318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8112693,"threshold_uncertainty_score":0.08993522,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08563221725170994,"score_gpt":0.2680742909074756,"score_spread":0.1824420736557656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}