{"id":"W3005534877","doi":"10.1007/s13353-020-00549-5","title":"Advances in monitoring soil microbial community dynamic and function","year":2020,"lang":"en","type":"review","venue":"Journal of Applied Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":false,"ca_institutions":"Laurentian University; University of Sudbury","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Terminal restriction fragment length polymorphism; Temperature gradient gel electrophoresis; Microbial population biology; Ribosomal Intergenic Spacer analysis; Microbial ecology; Microorganism; Restriction fragment length polymorphism; Illumina dye sequencing; Amplified Ribosomal DNA Restriction Analysis; Soil microbiology; DNA sequencing; Computational biology; Genetics; Ribosomal DNA; Ecology; Polymerase chain reaction; 16S ribosomal RNA; Bacteria; Phylogenetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002182533,0.001575331,0.001974737,0.002266568,0.0002383757,0.001618352,0.001226979,0.001757031,0.002600814],"category_scores_gemma":[0.002347549,0.0003962032,0.0005453117,0.002480241,0.001000127,0.00188162,0.001285269,0.002139803,0.001908529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001021773,"about_ca_system_score_gemma":0.001716001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001630019,"about_ca_topic_score_gemma":0.002575673,"domain_scores_codex":[0.9995742,0.00006821015,0.00003795186,0.0001147888,0.0001647324,0.0000401964],"domain_scores_gemma":[0.9981788,0.001023832,0.000183618,0.00007257757,0.0004107696,0.0001303401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007045159,0.00004571529,0.0003114399,0.007615873,0.00005679807,0.00006664023,0.0000207913,0.0002617846,0.004519493,0.00288029,0.01271839,0.9714324],"study_design_scores_gemma":[0.00002683289,0.0002103443,0.003143894,0.003797504,0.0003109808,0.001097679,0.00009728508,0.000366563,0.004348077,0.00501501,0.9815187,0.00006722738],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001119379,0.99773,0.0008749363,0.0003769798,0.0002855292,0.000003530576,0.00002580945,0.00001207884,0.0005792383],"genre_scores_gemma":[0.001019838,0.9964601,0.001177658,0.0003787701,0.0004444622,0.00000835516,0.00004991257,0.000003540487,0.000457427],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002600814,"threshold_uncertainty_score":0.01154244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01822922781803083,"score_gpt":0.2843418997103698,"score_spread":0.2661126718923389,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}