{"id":"W3005969848","doi":"10.2147/idr.s232943","title":"<p>Characterization of the IncFII-IncFIB(pB171) Plasmid Carrying <em>bla</em><sub>NDM-5</sub> in <em>Escherichia coli</em> ST405 Clinical Isolate in Japan</p>","year":2020,"lang":"en","type":"article","venue":"Infection and Drug Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Agency for Medical Research and Development","keywords":"Plasmid; Multilocus sequence typing; Replicon; Escherichia coli; Biology; Whole genome sequencing; Microbiology; Cephalosporin; Genome; Enterobacteriaceae; Genetics; Gene; Antibiotics; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002807562,0.0005136675,0.0004379153,0.0004400992,0.0002763338,0.0002668084,0.0004876925,0.0003009725,0.001421912],"category_scores_gemma":[0.0005184463,0.0002349341,0.000624553,0.0006242921,0.000341041,0.0001911185,0.0003037621,0.0007450265,0.001249473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003350146,"about_ca_system_score_gemma":0.0005049719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004820714,"about_ca_topic_score_gemma":0.003353165,"domain_scores_codex":[0.9997277,0.00004342102,0.00003488894,0.00006613992,0.00007264374,0.00005517303],"domain_scores_gemma":[0.9996873,0.00008851789,0.00008192736,0.00005242071,0.00005166848,0.00003814943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002030489,0.0001912893,0.003993868,0.0001737869,0.00002351477,0.0003624783,0.0001559604,0.0002107309,0.9826421,0.0002745601,0.0005804666,0.01118819],"study_design_scores_gemma":[0.0001050715,0.0008601093,0.06751628,0.00005137182,0.0001375252,0.002725293,0.0003245409,0.003685906,0.9071373,0.0001643534,0.01724482,0.00004733993],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9507633,0.0006975372,0.03441863,0.0005012781,0.00009894616,0.0006352194,0.008380267,0.0003387269,0.004166147],"genre_scores_gemma":[0.8775603,0.0009363774,0.06152308,0.0002713683,0.00005641168,0.0004812603,0.04989786,0.0003903703,0.008882984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004820714,"threshold_uncertainty_score":0.009585261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.010989926431734,"score_gpt":0.2458844168166266,"score_spread":0.2348944903848926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}