{"id":"W3005969848","doi":"10.2147/idr.s232943","title":"<p>Characterization of the IncFII-IncFIB(pB171) Plasmid Carrying <em>bla</em><sub>NDM-5</sub> in <em>Escherichia coli</em> ST405 Clinical Isolate in Japan</p>","year":2020,"lang":"en","type":"article","venue":"Infection and Drug Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Agency for Medical Research and Development","keywords":"Plasmid; Multilocus sequence typing; Replicon; Escherichia coli; Biology; Whole genome sequencing; Microbiology; Cephalosporin; Genome; Enterobacteriaceae; Genetics; Gene; Antibiotics; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.002489795,0.00165829,0.002156318,0.000504775,0.0007346669,0.0005550012,0.001279785,0.001753369,0.0001404605],"category_scores_gemma":[0.001815867,0.001638381,0.0008394622,0.002219421,0.0008742763,0.0002958275,0.0009588185,0.001373796,0.00009600182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004775373,"about_ca_system_score_gemma":0.0007710275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003649152,"about_ca_topic_score_gemma":0.01105913,"domain_scores_codex":[0.9885006,0.001663634,0.003696629,0.002901541,0.001422754,0.001814839],"domain_scores_gemma":[0.9936597,0.0004278538,0.002296452,0.002007452,0.0008469532,0.0007615522],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002529315,0.0007410575,0.03337684,0.0006912012,0.0002811472,0.00005554962,0.001297698,0.0002032964,0.9544659,0.0006917864,0.003552754,0.002113433],"study_design_scores_gemma":[0.008668682,0.001080146,0.5762702,0.001801157,0.000430423,0.00006132609,0.0003262614,0.002772176,0.1897376,0.0003088812,0.2150108,0.003532352],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885117,0.002335762,0.001218966,0.0009787587,0.002258567,0.002000343,0.0004081438,0.0002415522,0.00204622],"genre_scores_gemma":[0.9878034,0.006192045,0.0006373194,0.001347132,0.001190577,0.0001538147,0.0005445735,0.0003121804,0.001818931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7647282,"threshold_uncertainty_score":0.9996164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.010989926431734,"score_gpt":0.2458844168166266,"score_spread":0.2348944903848926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}