{"id":"W3005975651","doi":"10.1101/2020.02.13.948026","title":"Emerging viruses in British Columbia salmon discovered via a viral immune response biomarker panel and metatranscriptomic sequencing","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"Hakai Institute","keywords":"Chinook wind; Biology; Salmo; Oncorhynchus; Aquaculture; Fishery; Virus; Zoology; Salmonidae; Virology; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002397575,0.0003408541,0.0002212338,0.0006741073,0.000442567,0.000650446,0.0001690496,0.0003519595,0.0006772213],"category_scores_gemma":[0.0003272026,0.0001811908,0.0002029225,0.0006500612,0.0002524129,0.0001311603,0.0002979017,0.0003550332,0.0002127256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009258329,"about_ca_system_score_gemma":0.001000047,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1369915,"about_ca_topic_score_gemma":0.2957696,"domain_scores_codex":[0.999779,0.0000142527,0.00001090225,0.00007068714,0.00008181675,0.00004339784],"domain_scores_gemma":[0.999719,0.00004056415,0.00005294287,0.0000174674,0.0001294321,0.00004060835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001713884,0.00002592597,0.1495043,0.00006574297,0.00003208233,0.0001417758,0.0003548768,0.0003018109,0.8416486,0.00004169355,0.0001922238,0.007519573],"study_design_scores_gemma":[0.000009115727,0.0002719367,0.8956564,0.00002927944,0.00007782545,0.0003507211,0.001251024,0.002278622,0.09718198,0.00006947944,0.002795818,0.00002780982],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957997,0.0002200652,0.001090674,0.00004786344,0.000006155005,0.0000383516,0.002028008,0.00002735489,0.0007416375],"genre_scores_gemma":[0.9887976,0.0002700172,0.004763259,0.0001508724,0.000005297132,0.00005145281,0.003127194,0.00001443097,0.002819816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8630085,"threshold_uncertainty_score":0.2723882,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03588088882925269,"score_gpt":0.2243899515013346,"score_spread":0.1885090626720819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}