{"id":"W3006301344","doi":"10.1101/gr.254391.119","title":"TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance","year":2020,"lang":"en","type":"article","venue":"Genome Research","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Quadram Institute Bioscience; Medical Research Council Canada","keywords":"Biology; Triclosan; Transposable element; Gene; Genome; Genetics; Computational biology; Bacterial genome size; Mode of action; Mutant; Phenotype; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008104615,0.0001387117,0.0002166607,0.00013554,0.0001683638,0.00004440886,0.0002139908,0.0001674455,0.000003712018],"category_scores_gemma":[0.0002101427,0.0001295959,0.00007751746,0.0004282289,0.0002241905,0.00001088423,0.0001763779,0.0002027431,0.000002864738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003081874,"about_ca_system_score_gemma":0.00005400528,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002770369,"about_ca_topic_score_gemma":0.00004434738,"domain_scores_codex":[0.9983228,0.0001817957,0.0002643276,0.0005063195,0.0004007853,0.0003239476],"domain_scores_gemma":[0.999181,0.00003022482,0.0001005865,0.0003111414,0.0002472212,0.0001297963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002032185,0.00004606529,0.000009356308,0.00007813001,0.00005533912,0.000002437996,0.000056949,0.000008758497,0.9985917,0.0003476408,0.0001739149,0.0004265503],"study_design_scores_gemma":[0.0004001547,0.0003738003,0.00131242,0.00001942497,0.00002679176,0.000004537749,0.0003114645,0.00008122228,0.9836841,0.001655628,0.01193627,0.0001942216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8039593,0.003541737,0.1870736,0.00333028,0.00005736468,0.0007250344,0.0005079593,0.00008845965,0.0007162355],"genre_scores_gemma":[0.9885246,0.000677025,0.009726735,0.00005354328,0.0001557051,0.00001525754,0.0002153393,0.00002082546,0.0006109711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1845653,"threshold_uncertainty_score":0.5284765,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06246273219159994,"score_gpt":0.3362038884049963,"score_spread":0.2737411562133964,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}