{"id":"W3006385488","doi":"10.1101/2020.02.11.943803","title":"<i>V. longisporum</i> elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Xylem; Biology; Effector; Secretion; Extracellular; Fungus; Colonization; Wilt disease; Microbiology; Cell wall; Fungal protein; Enzyme; Biochemistry; Gene; Botany; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001630212,0.0005265268,0.000292057,0.0002591108,0.00009071818,0.0003575072,0.0001027146,0.0002555173,0.0008819603],"category_scores_gemma":[0.0001582039,0.00009298557,0.000302683,0.0002307873,0.0001363353,0.0002378132,0.0002777827,0.0003901355,0.0003009642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000151824,"about_ca_system_score_gemma":0.00007288755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002576573,"about_ca_topic_score_gemma":0.0003336059,"domain_scores_codex":[0.9998531,0.00002690041,0.00001789945,0.00003684685,0.00003285279,0.00003230042],"domain_scores_gemma":[0.9998633,0.00004017314,0.00003706871,0.00001675229,0.00001725174,0.00002539588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003583336,0.000006399519,0.0001273971,0.00000977264,0.000001327292,0.00001225372,0.000002536596,0.000006651262,0.9995615,0.00000367734,0.000007117616,0.0002254936],"study_design_scores_gemma":[0.000006646902,0.0002614122,0.02436697,0.000006178252,0.0000143038,0.0003035614,0.00002967383,0.0004422753,0.9736694,0.00002891424,0.0008649626,0.000005812268],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923347,0.0007795083,0.002853227,0.0001045841,0.00003022694,0.00005380462,0.002489325,0.00008866331,0.001265867],"genre_scores_gemma":[0.9871078,0.0003550513,0.004834345,0.0001182669,0.00002297675,0.00008240571,0.005908218,0.00003863424,0.001532388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008819603,"threshold_uncertainty_score":0.00295049,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02470595928897659,"score_gpt":0.201313738899864,"score_spread":0.1766077796108874,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}