{"id":"W3006446512","doi":"10.1158/2326-6066.cir-19-0541","title":"Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer","year":2020,"lang":"en","type":"article","venue":"Cancer Immunology Research","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Ontario Institute for Cancer Research; Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Terry Fox Research Institute","keywords":"Biology; Ovarian cancer; Immunotherapy; Antigen; Cancer; Genetics; Cancer research","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008931214,0.0003214134,0.0007730175,0.0004808235,0.0003366722,0.00002836974,0.00100845,0.0004527242,0.004164883],"category_scores_gemma":[0.0002697421,0.0003087985,0.0001777913,0.001259409,0.001459103,0.0001863839,0.0003603715,0.001604932,0.0002625837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003717918,"about_ca_system_score_gemma":0.001176903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002418341,"about_ca_topic_score_gemma":0.0001700775,"domain_scores_codex":[0.9959434,0.001260832,0.0007660866,0.0007420932,0.0001327588,0.001154811],"domain_scores_gemma":[0.9983137,0.0003525792,0.0002196907,0.0006826803,0.0003881793,0.00004316032],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.007366215,0.0001582374,0.01216889,0.00006889752,0.0005219934,0.00004461401,0.004131879,0.00003953823,0.9633029,0.0003035747,0.00317717,0.008716156],"study_design_scores_gemma":[0.005274104,0.0006924951,0.03812069,0.0002835807,0.00001647832,0.00004660685,0.002027844,0.000008735849,0.7148449,0.00007559126,0.2381721,0.0004367769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.851873,0.1408729,0.00002521377,0.004701165,0.0007013426,0.001065752,0.0002242904,0.00005228037,0.0004840999],"genre_scores_gemma":[0.9807311,0.01647425,0.00006021369,0.0003781785,0.0000752937,0.0005759101,0.00005862158,0.00006970203,0.001576777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2484579,"threshold_uncertainty_score":0.9999364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08396748384329009,"score_gpt":0.3402985964987779,"score_spread":0.2563311126554878,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}