{"id":"W3006662344","doi":"10.1111/irv.12722","title":"Influenza Classification Suite: An automated Galaxy workflow for rapid influenza sequence analysis","year":2020,"lang":"en","type":"article","venue":"Influenza and Other Respiratory Viruses","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Provincial Health Services Authority","funders":"Public Health Agency of Canada","keywords":"Clade; Suite; Workflow; Computational biology; Biology; Virology; Computer science; Influenza A virus subtype H5N1; Genetics; Database; Gene; Virus; Phylogenetics; Geography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009736909,0.0006904731,0.00119448,0.0007574141,0.0005427899,0.0002768235,0.0004533171,0.0004099373,0.0002806014],"category_scores_gemma":[0.001738543,0.0006102311,0.0003955874,0.002072884,0.0006939574,0.0007705307,0.0001708442,0.0005124888,0.0001532388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000181031,"about_ca_system_score_gemma":0.0003523637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001204103,"about_ca_topic_score_gemma":0.00006621666,"domain_scores_codex":[0.9952458,0.0003450216,0.00131674,0.001243648,0.0008685127,0.0009803303],"domain_scores_gemma":[0.9965522,0.0004017907,0.0004606259,0.001000024,0.0006252829,0.0009600227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003838275,0.0001909496,0.9363046,0.0004677644,0.002124016,0.00003048387,0.003001166,0.0004578376,0.04291425,0.0005805034,0.001794762,0.008295417],"study_design_scores_gemma":[0.004459225,0.001346066,0.111302,0.0001025025,0.001067577,0.000003969991,0.000423542,0.006497928,0.003793693,0.00008626482,0.8701999,0.0007173218],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.9882964,0.006306136,0.0003829743,0.0001103074,0.00007138138,0.002153446,0.0003921191,0.001544427,0.0007428015],"genre_scores_gemma":[0.2028988,0.00002584526,0.003789742,0.7911603,0.0008561559,0.0009482069,0.00001083855,0.0002954203,0.00001465141],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8684051,"threshold_uncertainty_score":0.9996349,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.4336335063889339,"score_gpt":0.4835675508758827,"score_spread":0.04993404448694871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}