{"id":"W3006662344","doi":"10.1111/irv.12722","title":"Influenza Classification Suite: An automated Galaxy workflow for rapid influenza sequence analysis","year":2020,"lang":"en","type":"article","venue":"Influenza and Other Respiratory Viruses","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Provincial Health Services Authority","funders":"Public Health Agency of Canada","keywords":"Clade; Suite; Workflow; Computational biology; Biology; Virology; Computer science; Influenza A virus subtype H5N1; Genetics; Database; Gene; Virus; Phylogenetics; Geography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00207093,0.001679573,0.001255074,0.001632749,0.0009806915,0.001914203,0.002495106,0.0009309798,0.01827888],"category_scores_gemma":[0.003934103,0.00107772,0.00177278,0.001119722,0.0003387259,0.0008965796,0.001971799,0.001568263,0.01835759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009156456,"about_ca_system_score_gemma":0.002308216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01233044,"about_ca_topic_score_gemma":0.01767629,"domain_scores_codex":[0.999014,0.0002093105,0.0001143762,0.0002662172,0.0002698127,0.0001262773],"domain_scores_gemma":[0.9988595,0.0003346431,0.00009985716,0.0001996038,0.0003805444,0.0001257713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001981234,0.000193963,0.01479792,0.001508137,0.0009472757,0.0004868562,0.000763126,0.009414101,0.06154401,0.006352155,0.7797081,0.1223032],"study_design_scores_gemma":[0.001185509,0.0003435838,0.02364266,0.0002937313,0.000312944,0.001014142,0.0004363466,0.3017529,0.0773973,0.01729264,0.5757448,0.0005834441],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.03095371,0.001162103,0.2951177,0.0007103804,0.0003237703,0.0008764886,0.1626552,0.4935603,0.01464038],"genre_scores_gemma":[0.06766416,0.0006243712,0.56903,0.0009485162,0.0001055983,0.001909277,0.3228698,0.02991374,0.006934475],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.01827888,"threshold_uncertainty_score":0.06114888,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.4336335063889339,"score_gpt":0.4835675508758827,"score_spread":0.04993404448694871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}