{"id":"W3006928766","doi":"10.1128/mbio.03395-19","title":"The HIV-1 Accessory Protein Vpu Downregulates Peroxisome Biogenesis","year":2020,"lang":"en","type":"article","venue":"mBio","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Women and Children’s Health Research Institute; Montreal Clinical Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research; University Hospital Foundation; Government of Canada","keywords":"Peroxisome; Biology; Innate immune system; Cell biology; Biogenesis; Immune system; Signal transduction; Immunology; Receptor; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001162608,0.00021633,0.0001469205,0.00002140322,0.0002613534,0.00009662927,0.0004935149,0.0001935306,0.00007757809],"category_scores_gemma":[0.0001335845,0.0001551127,0.000119868,0.0001796498,0.0001522877,0.000007461506,0.0002329178,0.0001259044,0.0002188184],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001683957,"about_ca_system_score_gemma":0.00007338615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007899428,"about_ca_topic_score_gemma":0.000005966257,"domain_scores_codex":[0.9987437,0.00008888946,0.0002137063,0.0004334676,0.0001632461,0.0003570607],"domain_scores_gemma":[0.99929,0.0000115286,0.00008342171,0.0003729399,0.00007082104,0.0001712883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001065569,0.00002927417,0.001870648,0.00001315177,0.00007164092,0.000001629726,0.00005222083,0.000008262661,0.9887635,0.00003317232,0.006878142,0.002171777],"study_design_scores_gemma":[0.0002568394,0.0001435785,0.0005111296,0.000005480881,0.000008540243,0.000003080305,0.00007148843,0.00002250277,0.8219524,0.00001911866,0.1768132,0.0001926595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920622,0.001765474,0.000101808,0.004938378,0.000111502,0.0003521679,0.00005509747,0.00006802702,0.0005454133],"genre_scores_gemma":[0.9970662,0.000160168,0.0001946945,0.0007511521,0.0004777186,0.00009394543,0.0001075794,0.00004280751,0.001105739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1699351,"threshold_uncertainty_score":0.6325312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01232139165805303,"score_gpt":0.220801408649246,"score_spread":0.2084800169911929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}