{"id":"W3007401727","doi":"10.1016/j.jviromet.2020.113840","title":"Performance of AmpFire HPV assay on neck cervical lymph node aspirate and oropharyngeal samples","year":2020,"lang":"en","type":"article","venue":"Journal of Virological Methods","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Loop-mediated isothermal amplification; Lymph node; Biology; Saliva; Cervical lymph nodes; Human papillomavirus; Pathology; Medicine; Internal medicine; Oncology; Cancer; Metastasis; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001062621,0.0001702909,0.0009927051,0.00005601854,0.00006248175,0.000008048093,0.0001176329,0.0001410508,0.0002257974],"category_scores_gemma":[0.001398941,0.0001002389,0.00016444,0.000165364,0.0001778878,0.00006577991,0.00008314278,0.0004395545,0.000004128813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003144165,"about_ca_system_score_gemma":0.00006396454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004713897,"about_ca_topic_score_gemma":2.610107e-7,"domain_scores_codex":[0.9982702,0.0004171447,0.0005991896,0.0001884774,0.0003044533,0.0002205595],"domain_scores_gemma":[0.9983932,0.0007644752,0.0002948468,0.0001039699,0.0001258052,0.0003177391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.01052952,0.0005703127,0.2821538,0.000673907,0.0004068022,0.0002683717,0.0008045486,0.00007638359,0.08183594,0.0003509673,0.000736812,0.6215926],"study_design_scores_gemma":[0.002619572,0.01079326,0.9693503,0.0001603513,0.0001909879,0.0001770525,0.00006766694,0.001779048,0.00785123,0.0001510235,0.006723651,0.000135791],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866765,0.001318308,0.001152879,0.008629023,0.0001264638,0.00008012596,0.000003668331,0.00001132349,0.002001699],"genre_scores_gemma":[0.9123828,0.001252743,0.07982134,0.006111891,0.0004014997,0.000001968484,4.503374e-7,0.00001132755,0.00001599107],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6871966,"threshold_uncertainty_score":0.4087625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.108850945315657,"score_gpt":0.3861940199014687,"score_spread":0.2773430745858117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}