{"id":"W3007469307","doi":"10.1093/jcag/gwz047.008","title":"A9 BACTERIAL BILE SALT HYDROLASE GENE ABUNDANCE IS ASSOCIATED WITH RORC GENE EXPRESSION IN INTESTINAL MUCOSA OF INFLAMMATORY DISEASE PATIENTS","year":2020,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Ulcerative colitis; Inflammatory bowel disease; Biology; Transcriptome; Gene expression; Bile acid; Microbiome; Gene; Gastroenterology; Ileum; Internal medicine; Medicine; Disease; Bioinformatics; Endocrinology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001189688,0.0001843627,0.0003611713,0.0006200251,0.0002183959,0.0004392503,0.0001246485,0.0003438639,0.002696317],"category_scores_gemma":[0.0004812667,0.0001190589,0.000309711,0.0005460083,0.000165598,0.0001576878,0.0002124565,0.0002479905,0.0003555759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001215596,"about_ca_system_score_gemma":0.00007433431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005691243,"about_ca_topic_score_gemma":0.0006615883,"domain_scores_codex":[0.9997997,0.00003711404,0.00002532411,0.00007310895,0.00002296464,0.0000418685],"domain_scores_gemma":[0.9996288,0.00006287874,0.0001751262,0.00001901706,0.00003382379,0.0000802731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001848445,0.00005496899,0.9471651,0.00008988519,0.0001021803,0.0005410792,0.0001525861,0.00006933533,0.044783,0.00003043207,0.000221483,0.004941582],"study_design_scores_gemma":[0.00000827955,0.0001244714,0.9976885,0.000007591645,0.0000416954,0.0007192295,0.0001864821,0.0001479121,0.0007762361,0.00002357161,0.0002727592,0.000003264839],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988688,0.0004083474,0.00009034237,0.00003000283,0.000004455246,0.000003496126,0.0003299851,0.000005866456,0.0002587586],"genre_scores_gemma":[0.9991442,0.00009720881,0.0001443384,0.00002085532,0.000008110717,0.000007824512,0.0003430466,0.000002776898,0.0002317092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002696317,"threshold_uncertainty_score":0.00902003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0042292147163726,"score_gpt":0.1817830370393194,"score_spread":0.1775538223229468,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}