{"id":"W3007669493","doi":"10.1093/sysbio/syaa013","title":"Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":323,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Natural Science Foundation of China","keywords":"Chloroplast DNA; Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Clade; Caesalpinioideae; Phylogenetics; NdhF; Taxon; Molecular clock; Fabaceae; Paleontology; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001790515,0.0003590675,0.000408019,0.001226052,0.0009209992,0.001254343,0.0004570438,0.0003836096,0.0007271684],"category_scores_gemma":[0.00466899,0.0002319583,0.0003384089,0.001431891,0.0009488165,0.00101041,0.001111207,0.0008607145,0.000140821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004113702,"about_ca_system_score_gemma":0.0002122461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000360059,"about_ca_topic_score_gemma":0.0008154188,"domain_scores_codex":[0.999225,0.0003013199,0.00005369424,0.0002516864,0.0001088327,0.0000594052],"domain_scores_gemma":[0.9971575,0.001470416,0.0008690329,0.0002894733,0.0001228076,0.0000907787],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004777639,0.00005772811,0.6050392,0.0003717978,0.0006548758,0.0007090931,0.003666258,0.01274398,0.3067867,0.007869231,0.0002645476,0.06135884],"study_design_scores_gemma":[0.00002658769,0.0001582638,0.848509,0.0001043558,0.0003782191,0.001982162,0.0024488,0.0727926,0.03372089,0.03441556,0.005367041,0.00009655442],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823101,0.0005485137,0.01631599,0.00009243044,0.000002968894,0.000005387516,0.0002188756,0.00003343544,0.0004724258],"genre_scores_gemma":[0.9967405,0.00009351372,0.002823296,0.00002166488,0.000003023927,0.000003305029,0.0002651518,0.00000791936,0.00004174227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001790515,"threshold_uncertainty_score":0.009469211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.100831817223884,"score_gpt":0.2166505558758479,"score_spread":0.1158187386519638,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}