{"id":"W3008311995","doi":"10.1111/tra.12723","title":"Ultrastructural insights into pathogen clearance by autophagy","year":2020,"lang":"en","type":"article","venue":"Traffic","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Wellcome Trust; Astellas Pharma; Astellas Foundation for Research on Metabolic Disorders; Medical Research Council Canada","keywords":"Biology; Vacuole; Autophagy; Cell biology; Cytosol; Mitophagy; Ubiquitin; Endoplasmic reticulum; Bacterial outer membrane; Salmonella; Bacteria; Biochemistry; Apoptosis; Cytoplasm; Escherichia coli; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001828509,0.0001504242,0.000231617,0.00002186641,0.00006463575,0.00001310388,0.000106901,0.00007348492,0.000424879],"category_scores_gemma":[0.0000182449,0.0001229015,0.00009679795,0.000168445,0.00006685117,0.00006811831,0.00001067901,0.000162178,0.0003023507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000226296,"about_ca_system_score_gemma":0.00005525997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000030688,"about_ca_topic_score_gemma":6.489631e-7,"domain_scores_codex":[0.999151,0.00002616732,0.0001728161,0.0002661376,0.0001927117,0.0001911476],"domain_scores_gemma":[0.9994583,0.00001612784,0.00003888641,0.0001697056,0.00002616503,0.0002908259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002088887,0.0004286427,0.0006710278,0.0003793194,0.0004153639,0.0007573268,0.02174653,0.0004858706,0.7216177,0.0007376199,0.03229414,0.2183776],"study_design_scores_gemma":[0.02061738,0.004233389,0.2061614,0.0002612618,0.0006284659,0.0001987726,0.001345948,0.02748247,0.3393569,0.0009959266,0.3966776,0.002040525],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993593,0.004053421,0.00007125644,0.001255276,0.00009836195,0.0002051258,0.000007988502,0.0002711138,0.0004444533],"genre_scores_gemma":[0.9946708,0.0001287937,0.0002094188,0.004446499,0.0002674998,0.000008593635,0.00005891606,0.00002829744,0.000181186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3822608,"threshold_uncertainty_score":0.5011777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009097372369761861,"score_gpt":0.241429554407914,"score_spread":0.2323321820381522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}