{"id":"W3008341390","doi":"10.1142/s0219720020500122","title":"Reanalysis of Alzheimer’s brain sequencing data reveals absence of purported HHV6A and HHV7","year":2020,"lang":"en","type":"letter","venue":"Journal of Bioinformatics and Computational Biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Shotgun sequencing; Variola virus; Smallpox; Biology; Disease; Shotgun; Computational biology; DNA sequencing; Virology; Genetics; Medicine; Gene; Pathology; Vaccination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003322671,0.0003906668,0.0004434418,0.001272922,0.001374,0.001508235,0.001122705,0.003909931,0.002417332],"category_scores_gemma":[0.02300734,0.0003490875,0.0004550981,0.0008051681,0.0008760702,0.0006538467,0.0003914015,0.004466696,0.004916719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009198972,"about_ca_system_score_gemma":0.0009228187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003641223,"about_ca_topic_score_gemma":0.008813075,"domain_scores_codex":[0.9977909,0.0003686677,0.0003215565,0.0003433588,0.0009943814,0.0001811175],"domain_scores_gemma":[0.98218,0.007543677,0.0005706984,0.001547739,0.007145878,0.001011939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000551539,0.000124976,0.03342815,0.0002900107,0.0001535538,0.005738252,0.001238414,0.0003684245,0.01646827,0.002295405,0.7634142,0.1759288],"study_design_scores_gemma":[0.0001190269,0.0003408558,0.0444236,0.0005182414,0.0001955307,0.02945429,0.001867488,0.009123215,0.04227696,0.01625667,0.8552416,0.0001826078],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.1030161,0.00711186,0.0245102,0.7937967,0.04006959,0.0002514629,0.004998807,0.0024605,0.02378483],"genre_scores_gemma":[0.3554641,0.006146807,0.04374624,0.519954,0.02715398,0.0004147393,0.005453515,0.001418953,0.04024759],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.003909931,"threshold_uncertainty_score":0.01757222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06476122469075482,"score_gpt":0.3092507797054867,"score_spread":0.2444895550147319,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}