{"id":"W3008576258","doi":"10.1101/2020.02.28.970186","title":"Metaproteomic responses of <i>in vitro</i> gut microbiomes to resistant starches: the role of resistant starch type and inter-individual variations","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Food composition and properties","field":"Nursing","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Government of Canada; Genome Canada; Ontario Genomics; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute","keywords":"Butyrate; Microbiome; Lachnospiraceae; Resistant starch; Biology; Gut flora; Metabolism; Biochemistry; Microbiology; Starch; Fermentation; Gene; Genetics; Firmicutes","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005649786,0.0004019576,0.0004422783,0.0003428091,0.0002422342,0.0007611154,0.0002075078,0.0003259609,0.0008117823],"category_scores_gemma":[0.0005189689,0.0001915982,0.0006588186,0.0005027044,0.0002245495,0.0002648646,0.0004669774,0.0005072561,0.0002603971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002097381,"about_ca_system_score_gemma":0.0002147929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001316538,"about_ca_topic_score_gemma":0.001376312,"domain_scores_codex":[0.9995734,0.0001287365,0.00003287227,0.0001299139,0.00008701014,0.00004806838],"domain_scores_gemma":[0.9997023,0.00006202876,0.00008473865,0.00004988755,0.00006596653,0.00003496963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002568077,0.00003431313,0.01332349,0.00007568999,0.0001394182,0.00002015287,0.00005523463,0.0002457757,0.9837309,0.0000243883,0.00006441049,0.00202935],"study_design_scores_gemma":[0.00001547127,0.0008379839,0.5132352,0.00003238227,0.0004631276,0.0003433467,0.0004845939,0.005082554,0.4757139,0.0002010505,0.00354356,0.00004696272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923609,0.0007997294,0.003812061,0.00005608159,0.00002653969,0.0000333219,0.00241864,0.00003101423,0.0004618346],"genre_scores_gemma":[0.9902883,0.0004667632,0.004745366,0.0001486467,0.0000183246,0.00007117054,0.003603844,0.00003794231,0.0006197517],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001316538,"threshold_uncertainty_score":0.002987921,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02527744445831607,"score_gpt":0.2413480028685197,"score_spread":0.2160705584102036,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}