{"id":"W3008699132","doi":"10.1371/journal.pone.0229375","title":"The MsrAB reducing pathway of Streptococcus gordonii is needed for oxidative stress tolerance, biofilm formation, and oral colonization in mice","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Redox biology and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nova Scotia Health Authority; Izaak Walton Killam Health Centre; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Umm Al-Qura University","keywords":"Streptococcus gordonii; Oxidative stress; Methionine sulfoxide reductase; Operon; Biofilm; Methionine sulfoxide; Methionine; Oxidative phosphorylation; Biology; Streptococcus mutans; Biochemistry; Microbiology; Chemistry; Escherichia coli; Gene; Bacteria; Amino acid; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003227176,0.0006455702,0.0003341601,0.0007924379,0.0003142441,0.0003526288,0.0003078654,0.0005811689,0.001475427],"category_scores_gemma":[0.0002036915,0.0003287184,0.0004845968,0.0002511779,0.0005626399,0.0002579597,0.0003632587,0.001154104,0.0003169889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004946179,"about_ca_system_score_gemma":0.0004707667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001205645,"about_ca_topic_score_gemma":0.001552321,"domain_scores_codex":[0.9995342,0.00008432024,0.00004712288,0.00009201063,0.0001158681,0.000126617],"domain_scores_gemma":[0.9995728,0.00002797865,0.0001364109,0.00004445706,0.00003809322,0.00018023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002658998,0.00006907294,0.000317163,0.0000156466,0.000004089625,0.0000427126,0.00001749989,0.00001868728,0.9986024,0.00007718734,0.00001801982,0.0005515029],"study_design_scores_gemma":[0.00005885178,0.001474084,0.01072646,0.00001523444,0.00003701392,0.0003386012,0.0001205716,0.0008496225,0.9843721,0.0001306845,0.001865196,0.00001160908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965112,0.0003237813,0.001884294,0.0001858534,0.00002774229,0.00003585024,0.0003170172,0.00008673068,0.0006274125],"genre_scores_gemma":[0.9917174,0.0004200314,0.003151318,0.0001488971,0.00001170201,0.00008937724,0.0007811898,0.00005502268,0.003624995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001475427,"threshold_uncertainty_score":0.004935801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02554469911287224,"score_gpt":0.2412847207507342,"score_spread":0.215740021637862,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}