{"id":"W3009671041","doi":"10.1534/g3.119.400613","title":"Restriction Enzyme Based Enriched L1Hs Sequencing (REBELseq): A Scalable Technique for Detection of Ta Subfamily L1Hs in the Human Genome","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"National Institute of Neurological Disorders and Stroke; National Health and Medical Research Council; National Institute of Mental Health; NSW Ministry of Health; Medical Research Council; National Institutes of Health; H. Lundbeck A/S; Astellas Foundation for Research on Metabolic Disorders; Astellas Pharma; Office of Health and Medical Research; National Institute on Drug Abuse; National Alliance for Research on Schizophrenia and Depression; Brain and Behavior Research Foundation","keywords":"Retrotransposon; Subfamily; Biology; Genome; Human genome; Genetics; Interspersed repeat; Mobile genetic elements; DNA sequencing; Computational biology; Retroposon; Gene; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009806528,0.0007939477,0.0005646583,0.001068719,0.0004292743,0.0006410699,0.0006520271,0.0007637864,0.002927276],"category_scores_gemma":[0.001550865,0.0004040932,0.000661852,0.0006552837,0.0003047902,0.0003573275,0.000770436,0.00109085,0.002059677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002830037,"about_ca_system_score_gemma":0.0003758802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007085267,"about_ca_topic_score_gemma":0.003084408,"domain_scores_codex":[0.999159,0.0001667385,0.00003884127,0.0003589109,0.0002077453,0.00006884586],"domain_scores_gemma":[0.999333,0.0002449728,0.0001638867,0.0001170969,0.00008887885,0.00005216489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002031925,0.00004415151,0.003825992,0.0002332169,0.00009796767,0.0001333447,0.0001646308,0.0007868092,0.9628893,0.0004450251,0.0007923521,0.03038406],"study_design_scores_gemma":[0.00005910246,0.000564223,0.03039403,0.00007015499,0.0001792267,0.001678383,0.0001639263,0.01832148,0.926297,0.001138022,0.02105086,0.00008363726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4127096,0.003256873,0.5542149,0.000352579,0.0001171429,0.0007480822,0.01598421,0.006602039,0.006014631],"genre_scores_gemma":[0.3323895,0.001385513,0.6396639,0.0006915138,0.00004893035,0.0007221159,0.01836291,0.0009145702,0.005820993],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002927276,"threshold_uncertainty_score":0.009792686,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04283565133002708,"score_gpt":0.2368738403128766,"score_spread":0.1940381889828496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}