{"id":"W3009689852","doi":"10.1128/mra.00109-20","title":"Complete Genome Sequence of the Highly Pathogenic Strain A/Domestic Goose/Pavlodar/1/05 (H5N1) of the Avian Influenza Virus, Isolated in Kazakhstan in 2005","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences","funders":"Ministry of Education and Science of the Republic of Kazakhstan","keywords":"Goose; Influenza A virus subtype H5N1; Strain (injury); Virology; Whole genome sequencing; Clade; Highly pathogenic; Biology; Avian influenza virus; Virus; Genome; Virus strain; Gene; Genetics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006997195,0.0003250988,0.0007664312,0.0001869152,0.0001285941,0.000009107305,0.000861969,0.000209436,0.00007272849],"category_scores_gemma":[0.00049749,0.0002160709,0.0001789358,0.001115521,0.001091009,0.00005513618,0.0006799608,0.000773697,0.00003124655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003224373,"about_ca_system_score_gemma":0.0003416282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003001395,"about_ca_topic_score_gemma":0.0004836635,"domain_scores_codex":[0.9967142,0.0006235381,0.001057346,0.0005074541,0.0002853963,0.0008120699],"domain_scores_gemma":[0.9985126,0.0001411673,0.0003989995,0.0006719253,0.0001674232,0.0001078441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005928344,0.0001458056,0.112441,0.0001426891,0.0001394782,0.00003741771,0.002262837,0.0002424532,0.8835548,0.00002024375,0.0002997705,0.0001207258],"study_design_scores_gemma":[0.01311848,0.001794181,0.3890757,0.001214665,0.0002152831,0.000148072,0.001724357,0.000514498,0.007764141,0.0000964444,0.5835351,0.0007990803],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9873577,0.001727683,0.00000589774,0.002199807,0.0000682763,0.001457998,0.006895174,0.00002083528,0.0002666549],"genre_scores_gemma":[0.992464,0.0000914402,0.00006440717,0.006800833,0.00003967974,0.00003873405,0.0002863859,0.0000350006,0.0001795074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8757907,"threshold_uncertainty_score":0.8811116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0734403286861405,"score_gpt":0.3249122990300054,"score_spread":0.2514719703438649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}