{"id":"W3010224892","doi":"10.1186/s13104-020-4917-5","title":"Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli","year":2020,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Iowa State University","keywords":"Virulence; Escherichia coli; Biology; Pathogenic Escherichia coli; Microbiology; Neonatal meningitis; Bacterial outer membrane; Fimbria; In silico; Bacterial adhesin; Pilus; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00122294,0.0002010095,0.0002752335,0.00007645383,0.0001514191,0.00004513599,0.0005914316,0.0001257332,0.00009076919],"category_scores_gemma":[0.008765377,0.0001783627,0.0001543879,0.0005037006,0.0005615809,0.000007523983,0.0007594749,0.0004263489,0.00004680027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002005327,"about_ca_system_score_gemma":0.0005358855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007382778,"about_ca_topic_score_gemma":0.00008735522,"domain_scores_codex":[0.9969642,0.0006099848,0.0003158154,0.0005723716,0.0008253612,0.0007122228],"domain_scores_gemma":[0.9982556,0.0002436495,0.0000734667,0.0004500251,0.0006636286,0.0003135974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004928321,0.000107089,0.006322233,0.0003010742,0.00006236997,0.00001728126,0.0001544816,0.00001949947,0.9909295,0.0001926481,0.0008340682,0.0005668895],"study_design_scores_gemma":[0.001128823,0.002100364,0.01088292,0.00008459435,0.00001152832,0.000005682635,0.0003501745,0.001221381,0.9738229,0.0001461337,0.009911905,0.0003336067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929062,0.001084572,0.001841417,0.001388454,0.00002072129,0.0009354266,0.00003902633,0.00002530464,0.001758895],"genre_scores_gemma":[0.9875414,0.00009953697,0.01111928,0.0001130345,0.0003752103,0.000242086,0.00002438637,0.00004050502,0.0004444979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01710665,"threshold_uncertainty_score":0.9995842,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1461690164444541,"score_gpt":0.3763476122043912,"score_spread":0.2301785957599371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}