{"id":"W3010340539","doi":"10.1038/s41598-020-61002-5","title":"Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":259,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Public Health Agency of Canada; Alberta Health Services; Canadian Food Inspection Agency; Agriculture Food and Rural Development; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Enterococcus faecium; Enterococcus hirae; Enterococcus; Biology; Antibiotic resistance; Enterococcus faecalis; Feedlot; Microbiology; Antimicrobial; Veterinary medicine; Drug resistance; Bacteria; Antibiotics; Staphylococcus aureus; Medicine; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007109698,0.000282019,0.0003484444,0.0009657669,0.0002601693,0.00077348,0.0002397929,0.0004147706,0.000618972],"category_scores_gemma":[0.001078031,0.0001473293,0.0002404821,0.001163459,0.0003552212,0.0005194299,0.0008760844,0.0002911962,0.0001864516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003169493,"about_ca_system_score_gemma":0.000294635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002012133,"about_ca_topic_score_gemma":0.003510723,"domain_scores_codex":[0.9992591,0.0001326759,0.00007624904,0.0002399368,0.0001625195,0.0001295816],"domain_scores_gemma":[0.9988443,0.0001987098,0.0004977407,0.00007016442,0.0002231256,0.000165982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002440816,0.0001011782,0.9556425,0.0001157172,0.00003888723,0.0004710586,0.0005095947,0.0001126323,0.03188574,0.00004537658,0.0001322929,0.01070102],"study_design_scores_gemma":[0.000001934823,0.0001977394,0.9967315,0.00001389762,0.00001137499,0.0005652048,0.0006129593,0.0001083821,0.001378267,0.00003655388,0.0003380555,0.000004113076],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983938,0.0003708228,0.0002864826,0.00004625054,0.000002363917,0.00001256778,0.0005239436,0.00000849432,0.0003552208],"genre_scores_gemma":[0.997436,0.0003502874,0.0007896072,0.00007119717,0.00000372157,0.00001256121,0.001166878,0.000002564221,0.0001672491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002012133,"threshold_uncertainty_score":0.004000843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03241204443024718,"score_gpt":0.2796664074555064,"score_spread":0.2472543630252592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}