{"id":"W3010351177","doi":"10.1186/s13071-020-3968-8","title":"Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation","year":2020,"lang":"en","type":"article","venue":"Parasites & Vectors","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Health Canada; Trent University; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Faculty of Veterinary Medicine, University of Calgary; Ontario Ministry of Agriculture, Food and Rural Affairs; Alberta Agriculture and Forestry","keywords":"Benchmarking; Biology; Parasitology; Variation (astronomy); Giardia; Entomology; Computational biology; Zoology; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003120719,0.001037469,0.0007355952,0.002006595,0.0005995276,0.001308124,0.000824558,0.0008379937,0.001275143],"category_scores_gemma":[0.008068278,0.0005022383,0.0009404782,0.001763903,0.0004859141,0.0006485522,0.001494618,0.0006576142,0.0007220635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008761166,"about_ca_system_score_gemma":0.0004647169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001814841,"about_ca_topic_score_gemma":0.002837751,"domain_scores_codex":[0.9980439,0.000474664,0.0002023032,0.0007076971,0.0004561614,0.0001153062],"domain_scores_gemma":[0.995837,0.001742995,0.0006997515,0.0006006478,0.0009584777,0.0001611883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003370404,0.0005270761,0.09478553,0.0009888088,0.001656956,0.0005185305,0.00124623,0.1348438,0.6530946,0.002119768,0.001646986,0.1052013],"study_design_scores_gemma":[0.0001151561,0.00164852,0.07889885,0.00006173883,0.0005692401,0.0007237324,0.0004248401,0.6293618,0.2814405,0.002101433,0.004518348,0.0001358313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8681495,0.0005536482,0.124139,0.00005164957,0.00003658388,0.0001575224,0.001715139,0.003728944,0.001468115],"genre_scores_gemma":[0.7760041,0.0001775606,0.2129342,0.00004527781,0.00001263816,0.0002377624,0.009172662,0.0007182293,0.0006975515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003120719,"threshold_uncertainty_score":0.01650417,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01217328010522986,"score_gpt":0.2306057247066989,"score_spread":0.218432444601469,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}