{"id":"W3010680088","doi":"10.1038/s41598-020-61088-x","title":"Metabolomic-guided discovery of cyclic nonribosomal peptides from Xylaria ellisii sp. nov., a leaf and stem endophyte of Vaccinium angustifolium","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Dalhousie University; Canadian Forest Service; Carleton University; Natural Resources Canada; McMaster University","funders":"Agriculture and Agri-Food Canada; McMaster University","keywords":"Metabolomics; Endophyte; Biology; Secondary metabolite; Mycelium; Botany; Nonribosomal peptide; Plant use of endophytic fungi in defense; Tandem mass spectrometry; Metabolome; Metabolite; Vaccinium; Chemistry; Biochemistry; Mass spectrometry; Biosynthesis; Enzyme; Chromatography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001026646,0.0004471044,0.0002375433,0.0003813348,0.0001259244,0.0003085495,0.0001106936,0.0002262343,0.0003257639],"category_scores_gemma":[0.0001600038,0.0001114287,0.0002792937,0.0003366287,0.0001241276,0.0002312435,0.0002236636,0.0002773886,0.0001449576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000106659,"about_ca_system_score_gemma":0.0002147767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004413598,"about_ca_topic_score_gemma":0.0007689188,"domain_scores_codex":[0.9999334,0.000007573831,0.000005740992,0.00002452125,0.00001589077,0.00001301909],"domain_scores_gemma":[0.9999093,0.00001525912,0.00002613127,0.000006385576,0.00002116627,0.00002170989],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007526229,0.00001353154,0.0007177186,0.00004142761,0.000005848409,0.0001014029,0.00001620723,0.00004349284,0.99663,0.00001135244,0.00001290622,0.002330953],"study_design_scores_gemma":[0.00002460296,0.0008772888,0.05490803,0.0000224522,0.00009320318,0.001188169,0.000191116,0.001427809,0.937789,0.000072479,0.003387077,0.00001866979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941004,0.001230217,0.002679592,0.00005604643,0.00001120073,0.00005893467,0.00119256,0.00003003986,0.0006408616],"genre_scores_gemma":[0.983372,0.001250788,0.01126778,0.0001033549,0.00001104455,0.0000365962,0.002853001,0.0000220602,0.00108333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004471044,"threshold_uncertainty_score":0.001089811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01689018585774276,"score_gpt":0.2253792973149102,"score_spread":0.2084891114571674,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}