{"id":"W3010736271","doi":"10.1101/2020.03.19.999144","title":"Identification and characterization of retro-DNAs, a new type of retrotransposons originated from DNA transposons, in primate genomes","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Brock University; Compute Canada","keywords":"Retrotransposon; Transposable element; Genome; Long terminal repeat; Biology; Genetics; Transposition (logic); DNA; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002452502,0.000368157,0.0005547154,0.001930906,0.0005273924,0.0008740116,0.0004206885,0.0005941585,0.00111876],"category_scores_gemma":[0.0004628998,0.0002843544,0.0006513226,0.001996261,0.0003070546,0.0004336691,0.0004206253,0.0007347108,0.001221339],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002414164,"about_ca_system_score_gemma":0.0004200039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001295096,"about_ca_topic_score_gemma":0.001852967,"domain_scores_codex":[0.9996474,0.0000204566,0.00003120122,0.0001475345,0.0001081739,0.00004525814],"domain_scores_gemma":[0.9995408,0.00004933431,0.0001254352,0.00004097454,0.0001333524,0.0001100908],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000128139,0.00006676611,0.01966979,0.0003996206,0.00005135839,0.0006035956,0.0003372477,0.000108291,0.9557478,0.0003065131,0.0002684748,0.02231235],"study_design_scores_gemma":[0.00006669174,0.001230717,0.5399009,0.0003235647,0.0005183082,0.01377989,0.001648341,0.005637725,0.330393,0.001397477,0.1049677,0.0001357112],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9543002,0.01531496,0.01457432,0.000255087,0.000121255,0.0003473801,0.01031944,0.000205307,0.004562064],"genre_scores_gemma":[0.9134016,0.00862582,0.03896653,0.0004256018,0.0001585289,0.0002429052,0.03048901,0.0001145098,0.007575491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001930906,"threshold_uncertainty_score":0.003742576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01964730414479423,"score_gpt":0.2150529961657136,"score_spread":0.1954056920209193,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}