{"id":"W3011197520","doi":"10.3389/fmicb.2020.00475","title":"Epidemiology of E. coli in Cystic Fibrosis Airways Demonstrates the Capacity for Persistent Infection but Not Patient-Patient Transmission","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health Services; McMaster University; University of Calgary","funders":"Cystic Fibrosis Canada; Calgary Laboratory Services","keywords":"Sputum; Carriage; Pulsed-field gel electrophoresis; Cystic fibrosis; Escherichia coli; Biology; Transmission (telecommunications); Molecular epidemiology; Phylogenetic tree; Microbiology; Sputum culture; Pathogen; Virology; Genotype; Medicine; Genetics; Gene; Tuberculosis; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005390093,0.0001478613,0.0002862348,0.001348923,0.0004296567,0.0007662227,0.0002334873,0.0005392128,0.000721538],"category_scores_gemma":[0.00238336,0.0002350096,0.0001789756,0.00134557,0.000561391,0.0004599182,0.000492501,0.0003309999,0.000165198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005113088,"about_ca_system_score_gemma":0.0004576192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006258923,"about_ca_topic_score_gemma":0.007072242,"domain_scores_codex":[0.9993211,0.000157349,0.0001152788,0.0001341363,0.0001493277,0.0001227817],"domain_scores_gemma":[0.9976606,0.0004276608,0.001309763,0.0001108522,0.0002524366,0.000238572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003221998,0.000008354674,0.996577,0.00001402898,0.000007625138,0.0002436748,0.0001285566,0.00002675225,0.000839239,0.00001641492,0.00002762442,0.002078475],"study_design_scores_gemma":[7.091064e-7,0.00005125649,0.9982597,0.00001191419,0.00000477494,0.001190014,0.0002337838,0.00005241084,0.00008668729,0.00001486065,0.00009117515,0.000002618978],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988856,0.0007066392,0.0001219624,0.00003311717,0.000001847651,0.000005854672,0.00005412052,0.000002880154,0.0001878536],"genre_scores_gemma":[0.9992755,0.0004087397,0.000157191,0.00002054195,0.000005352462,0.000003415037,0.00008860547,0.000001118711,0.00003949684],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006258923,"threshold_uncertainty_score":0.01244503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03113109500927472,"score_gpt":0.2727117737209603,"score_spread":0.2415806787116856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}