{"id":"W3011414077","doi":"10.1080/14789450.2020.1738931","title":"Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics","year":2020,"lang":"en","type":"review","venue":"Expert Review of Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Metaproteomics; Microbiome; Proteome; Metagenomics; Biology; Function (biology); Functional diversity; Computational biology; Proteogenomics; Ecology; Bioinformatics; Evolutionary biology; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002344835,0.001213309,0.001568508,0.002178784,0.0002442125,0.001875794,0.00104256,0.001230535,0.002474685],"category_scores_gemma":[0.002798507,0.0003503322,0.0009375116,0.002227965,0.000938847,0.002065166,0.0007773797,0.001930291,0.00145976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001178303,"about_ca_system_score_gemma":0.001246142,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001536252,"about_ca_topic_score_gemma":0.002081863,"domain_scores_codex":[0.9990989,0.0002716806,0.00006953302,0.0001941058,0.0003061835,0.00005953864],"domain_scores_gemma":[0.9985099,0.0008977465,0.0001977459,0.00003600969,0.0003055553,0.0000529606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001242928,0.00003899351,0.0008051749,0.04111258,0.0004466859,0.00009622745,0.0001104057,0.0007406765,0.004748084,0.007411344,0.02143864,0.9229269],"study_design_scores_gemma":[0.00002827417,0.0002308294,0.006138439,0.01761733,0.001007741,0.001375156,0.0002755791,0.001122794,0.00551673,0.01675698,0.9498019,0.0001283507],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002144437,0.9978866,0.0005163419,0.0005821813,0.0002059282,0.000004938287,0.00003176536,0.00001292405,0.0005447356],"genre_scores_gemma":[0.00263716,0.9955242,0.0007229717,0.0003964971,0.0002236462,0.00001162627,0.00004744854,0.000007870313,0.0004286128],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002474685,"threshold_uncertainty_score":0.01240081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06166519462304689,"score_gpt":0.3297573361672219,"score_spread":0.268092141544175,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}