{"id":"W3011414077","doi":"10.1080/14789450.2020.1738931","title":"Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics","year":2020,"lang":"en","type":"review","venue":"Expert Review of Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Metaproteomics; Microbiome; Proteome; Metagenomics; Biology; Function (biology); Functional diversity; Computational biology; Proteogenomics; Ecology; Bioinformatics; Evolutionary biology; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005478721,0.0007151497,0.002635709,0.00009654644,0.0001600351,0.0001340017,0.0006942904,0.0004919758,0.0003250448],"category_scores_gemma":[0.0001624686,0.0006507263,0.0004965853,0.0004035129,0.0002649201,0.0003176737,0.0004431774,0.001646808,0.00002391914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003825683,"about_ca_system_score_gemma":0.0003024157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002355837,"about_ca_topic_score_gemma":0.000006097558,"domain_scores_codex":[0.9976205,0.0002657844,0.0009084169,0.0006094085,0.0002582248,0.0003377018],"domain_scores_gemma":[0.9974124,0.0001142124,0.001138857,0.001096028,0.0001051238,0.0001333429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000428275,0.0002628289,0.000001031662,0.309388,0.0001967233,0.000009601972,0.0001830024,6.485737e-8,0.007941729,0.002072471,0.005116631,0.6747851],"study_design_scores_gemma":[0.00019285,0.00005630726,1.283669e-7,0.07619354,0.0001248291,0.00002902469,0.00002402228,0.000005016991,0.004718747,0.0007205908,0.917402,0.0005328985],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000008264957,0.9852143,0.007790544,0.0003988778,0.00008772211,0.004997814,0.0005206235,0.0001004327,0.0008814525],"genre_scores_gemma":[0.000002751897,0.9455951,0.05049977,0.0005204382,0.0002142959,0.002270047,0.000550972,0.0001111333,0.0002354806],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9122854,"threshold_uncertainty_score":0.9995944,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06166519462304689,"score_gpt":0.3297573361672219,"score_spread":0.268092141544175,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}