{"id":"W3011573990","doi":"10.1016/j.ijpara.2020.01.003","title":"Hiding in plain sight: discovery and phylogeography of a cryptic species of Trichinella (Nematoda: Trichinellidae) in wolverine (Gulo gulo)","year":2020,"lang":"en","type":"article","venue":"International Journal for Parasitology","topic":"Parasitic Diseases Research and Treatment","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of Northwest Territories; Canadian Food Inspection Agency; University of Alberta; Yukon Department of Environment; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency; Istituto Superiore di Sanità; University of Saskatchewan","keywords":"Subclade; Trichinella; Biology; Trichinella spiralis; Phylogenetic tree; Mitochondrial DNA; Zoology; Phylogeography; Genome; Evolutionary biology; Polymerase chain reaction; Clade; Genetics; Helminths; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001645979,0.0001370478,0.0005129614,0.0006245769,0.00001945355,0.00001827323,0.0001594138,0.00005745625,0.00005921062],"category_scores_gemma":[0.0004422102,0.0001096786,0.000175404,0.0002601024,0.000115449,0.000115049,0.00004562623,0.0001945915,0.000001611494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006135612,"about_ca_system_score_gemma":0.0001230377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004477188,"about_ca_topic_score_gemma":0.00002137857,"domain_scores_codex":[0.9986022,0.00006482608,0.000595068,0.0001868755,0.0003269715,0.0002241208],"domain_scores_gemma":[0.9990383,0.0003963322,0.0002045031,0.00006944437,0.0001281703,0.0001632429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00605343,0.0007369326,0.976997,0.000131998,0.0004938442,0.0009909596,0.0003947444,0.000257337,0.01077738,0.001582035,0.0001096904,0.001474641],"study_design_scores_gemma":[0.01149762,0.001775946,0.9743227,0.0002714888,0.00009463618,0.0004332206,0.0003847265,0.002686496,0.004911846,0.003052308,0.0004276828,0.0001413146],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947676,0.001191214,0.00104966,0.00199245,0.000169352,0.0002999221,0.00007186762,0.000004119826,0.0004538336],"genre_scores_gemma":[0.9984924,0.0006280593,0.0005389771,0.00009119775,0.0001245959,0.00001680115,0.00002650703,0.00001006562,0.00007136177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005865532,"threshold_uncertainty_score":0.4472564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03196235321363141,"score_gpt":0.3709381288514765,"score_spread":0.3389757756378451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}