{"id":"W3011628936","doi":"10.1111/1462-2920.14987","title":"<scp>QuiC2</scp> represents a functionally distinct class of dehydroshikimate dehydratases identified in <i>Listeria</i> species including <scp><i>Listeria monocytogenes</i></scp>","year":2020,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Listeria; Listeria monocytogenes; ORFS; Dehydratase; Operon; Shikimate pathway; Phylogenetic tree; Biosynthesis; Biochemistry; Microbiology; Genetics; Enzyme; Gene; Bacteria; Escherichia coli; Peptide sequence; Open reading frame","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002025546,0.0003323917,0.0005498718,0.00004445165,0.0002049301,0.00006332786,0.0004144129,0.0001826704,0.0005354476],"category_scores_gemma":[0.0001543561,0.0001909182,0.0002343654,0.0003309253,0.0003427016,0.0001957048,0.0004662534,0.000170063,0.0002177409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009422086,"about_ca_system_score_gemma":0.000007203039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008654819,"about_ca_topic_score_gemma":0.0003699076,"domain_scores_codex":[0.9975295,0.0003474998,0.00076204,0.0007438788,0.0001546221,0.0004624627],"domain_scores_gemma":[0.9988334,0.0004737679,0.0003851055,0.0001362741,0.00001228232,0.0001592299],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003431036,0.0001579255,0.06461614,0.00001751273,0.0000591865,0.0000231152,0.000323491,0.00009699276,0.9326597,0.00001306742,0.001806506,0.0001920507],"study_design_scores_gemma":[0.001013689,0.0004135924,0.4121349,0.00003872982,0.00009945573,0.00005829534,0.004127569,0.0001734617,0.4985995,0.00007789942,0.08307869,0.0001841697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99678,0.000301048,0.00001140899,0.0003207003,0.0001823928,0.0002787428,0.001277116,0.00004229928,0.0008062957],"genre_scores_gemma":[0.994769,0.0001527066,0.00006100154,0.001287912,0.000151845,0.00002390997,0.002530014,0.000005410616,0.001018199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4340602,"threshold_uncertainty_score":0.778542,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04513086733913357,"score_gpt":0.2242700571766278,"score_spread":0.1791391898374942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}