{"id":"W3011628936","doi":"10.1111/1462-2920.14987","title":"<scp>QuiC2</scp> represents a functionally distinct class of dehydroshikimate dehydratases identified in <i>Listeria</i> species including <scp><i>Listeria monocytogenes</i></scp>","year":2020,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Listeria; Listeria monocytogenes; ORFS; Dehydratase; Operon; Shikimate pathway; Phylogenetic tree; Biosynthesis; Biochemistry; Microbiology; Genetics; Enzyme; Gene; Bacteria; Escherichia coli; Peptide sequence; Open reading frame","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009224108,0.0005852629,0.0003497969,0.0007982015,0.0003953825,0.0006197545,0.0002706742,0.0003408593,0.0008995112],"category_scores_gemma":[0.0002653952,0.0001763337,0.0004685062,0.0009303945,0.0002621788,0.0003149883,0.00032082,0.0003938815,0.0005315066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000497036,"about_ca_system_score_gemma":0.0004170676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002946701,"about_ca_topic_score_gemma":0.002276584,"domain_scores_codex":[0.9998751,0.000007888045,0.00000822253,0.00004001966,0.00003880229,0.00002996939],"domain_scores_gemma":[0.9997552,0.00002411869,0.00007994944,0.00001775747,0.00005496071,0.00006796885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002239246,0.00003248219,0.008365343,0.0001195366,0.00001566002,0.000395197,0.00007163095,0.0001279099,0.9860612,0.0001837632,0.0002176908,0.004185691],"study_design_scores_gemma":[0.00002161544,0.0003528088,0.2211211,0.0000317934,0.00008616928,0.004756483,0.0002915202,0.002775931,0.7511893,0.0003018481,0.01901556,0.00005592264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883661,0.001281117,0.004304392,0.0001380279,0.00002782499,0.00005336666,0.003502282,0.0001690587,0.002157836],"genre_scores_gemma":[0.9794043,0.0005096109,0.006383159,0.0001534885,0.00002088,0.00004045247,0.01165302,0.00004087361,0.001794119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002946701,"threshold_uncertainty_score":0.005859077,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04513086733913357,"score_gpt":0.2242700571766278,"score_spread":0.1791391898374942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}