{"id":"W3011684354","doi":"10.1186/s12864-020-6586-0","title":"Loci associated with variation in gene expression and growth in juvenile salmon are influenced by the presence of a growth hormone transgene","year":2020,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor; Vancouver Island University; Fisheries and Oceans Canada","funders":"Fisheries and Oceans Canada","keywords":"Biology; Genetics; Single-nucleotide polymorphism; Quantitative trait locus; Gene; Genome-wide association study; Transgene; Phenotype; Gene expression; Candidate gene; Transgenesis; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003428006,0.0002630228,0.0002222052,0.0004022919,0.0002048211,0.0002344517,0.0001606489,0.0003175869,0.001558289],"category_scores_gemma":[0.0003443093,0.0001797412,0.0004184046,0.0005610944,0.0002469947,0.00009333852,0.0002843338,0.0004413009,0.0001679846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001775874,"about_ca_system_score_gemma":0.0002306006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002825144,"about_ca_topic_score_gemma":0.006166408,"domain_scores_codex":[0.9996966,0.00003965769,0.0000366072,0.0001266348,0.00005781066,0.00004269371],"domain_scores_gemma":[0.9995054,0.0001515986,0.0001941907,0.00003885274,0.00003519995,0.00007476786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007260898,0.00003209957,0.09460724,0.00008218712,0.0002335719,0.000251242,0.0001150823,0.0001407026,0.9004231,0.0000619653,0.0001194583,0.003207322],"study_design_scores_gemma":[0.00002906514,0.0001318467,0.9831581,0.00001029342,0.0001894362,0.0003690418,0.00006345232,0.0007137744,0.01482343,0.00004940466,0.0004495712,0.00001267076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983272,0.0001261619,0.0007952403,0.00002386726,0.000006047019,0.000005262441,0.0005257904,0.00002190013,0.0001684646],"genre_scores_gemma":[0.9976981,0.00006276873,0.001117959,0.00006333262,0.000004810825,0.00001967268,0.0005783397,0.00003189741,0.0004231422],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002825144,"threshold_uncertainty_score":0.00561738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01024763320058231,"score_gpt":0.2023768101508583,"score_spread":0.192129176950276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}