{"id":"W3011684354","doi":"10.1186/s12864-020-6586-0","title":"Loci associated with variation in gene expression and growth in juvenile salmon are influenced by the presence of a growth hormone transgene","year":2020,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor; Vancouver Island University; Fisheries and Oceans Canada","funders":"Fisheries and Oceans Canada","keywords":"Biology; Genetics; Single-nucleotide polymorphism; Quantitative trait locus; Gene; Genome-wide association study; Transgene; Phenotype; Gene expression; Candidate gene; Transgenesis; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001542329,0.0001008078,0.0001316909,0.00002005023,0.000029971,0.000009573453,0.0001059487,0.0001067154,6.769607e-7],"category_scores_gemma":[0.0001101812,0.0000770945,0.00002060031,0.0001391822,0.00005588023,0.000004753426,0.0000473641,0.00007640349,1.952375e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001495684,"about_ca_system_score_gemma":0.00004914548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007484863,"about_ca_topic_score_gemma":0.00008508386,"domain_scores_codex":[0.9992169,0.00006966216,0.0002047328,0.0002996543,0.00008663812,0.000122394],"domain_scores_gemma":[0.9996402,0.0000112232,0.0001380177,0.0001126212,0.00006143143,0.00003649588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002534524,0.00004465923,0.03159104,0.00001706348,0.000008493456,5.675843e-7,0.0005689447,0.0008627497,0.9665582,0.000004959816,0.00005997899,0.00002984908],"study_design_scores_gemma":[0.0007911568,0.0003082347,0.2221535,0.00001244735,0.00001065268,0.000001718416,0.0001355029,0.0005960973,0.7757964,0.00004525547,0.00003766998,0.0001113657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959911,0.001375266,0.002135587,0.000204229,0.00001078014,0.0002429854,0.00002336528,0.000003470266,0.00001325169],"genre_scores_gemma":[0.9985972,0.0005755161,0.000644567,0.00005601216,0.00003960962,0.00001522899,0.00004550111,0.00001391734,0.00001241457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1907618,"threshold_uncertainty_score":0.3143823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01024763320058231,"score_gpt":0.2023768101508583,"score_spread":0.192129176950276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}