{"id":"W3012018132","doi":"10.1371/journal.ppat.1007969","title":"Klebsiella pneumoniae type VI secretion system-mediated microbial competition is PhoPQ controlled and reactive oxygen species dependent","year":2020,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Svenska Kulturfonden; National Taiwan University Hospital; China Scholarship Council; Queen's University; Biocenter Finland; Åbo Akademi; Orionin Tutkimussäätiö; Queen's University Belfast","keywords":"Type VI secretion system; Biology; Klebsiella pneumoniae; Microbiology; Effector; rpoS; Gene; Escherichia coli; Genetics; Cell biology; Gene expression; Virulence; Promoter","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001072778,0.0001963318,0.0003331067,0.00003588695,0.000133588,0.00005042383,0.000106578,0.0001297794,0.00003892422],"category_scores_gemma":[0.0002539507,0.0001796051,0.00007941229,0.00009099967,0.00008517424,0.000005944485,0.0001795867,0.0001073834,0.00005659084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000438295,"about_ca_system_score_gemma":0.00006033347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006904254,"about_ca_topic_score_gemma":0.00001868253,"domain_scores_codex":[0.998741,0.0001459324,0.0002205273,0.0004267133,0.0001996735,0.0002661475],"domain_scores_gemma":[0.99932,0.00003085949,0.000105277,0.0001741265,0.0002255283,0.0001442275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007835843,0.00004262061,0.001189297,0.00008892078,0.0002735792,0.00002171605,0.0003170183,0.000001661713,0.9967922,0.0000191075,0.0004461769,0.00002409725],"study_design_scores_gemma":[0.007211517,0.001607591,0.01194137,0.0001093018,0.0002602651,0.00003683303,0.001793532,0.001231995,0.9649156,0.000006942395,0.01023369,0.000651396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963624,0.000439745,0.00009403315,0.000944565,0.00009860661,0.0005998181,0.0004755989,0.0000384969,0.0009466639],"genre_scores_gemma":[0.9979125,0.0005470929,0.00008190224,0.0003122115,0.0003774034,0.00003725507,0.0005305207,0.00002657541,0.0001745205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03187666,"threshold_uncertainty_score":0.7324084,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01722726395637442,"score_gpt":0.2234323835361962,"score_spread":0.2062051195798218,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}