{"id":"W3012517325","doi":"10.1186/s12915-020-0741-6","title":"The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome","year":2020,"lang":"en","type":"article","venue":"BMC Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds National de la Recherche Luxembourg; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; Grantová Agentura České Republiky","keywords":"Biology; Protist; Genome; Mitochondrial DNA; Gene; Proteome; Genetics; Nuclear gene; Whole genome sequencing; Bacteria; Mitochondrion; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002194515,0.0007842103,0.0004779518,0.001170762,0.0006534095,0.0008335639,0.0005915578,0.0004632165,0.001636612],"category_scores_gemma":[0.0009243314,0.0001930555,0.0006304633,0.001135644,0.000276928,0.0003830284,0.0003969375,0.0005868878,0.0008736668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000879732,"about_ca_system_score_gemma":0.001375151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004981813,"about_ca_topic_score_gemma":0.007240982,"domain_scores_codex":[0.999863,0.0000118905,0.00001632172,0.00005027285,0.00004068895,0.00001776836],"domain_scores_gemma":[0.9996455,0.00007614864,0.000110981,0.00002733514,0.00007608208,0.00006411962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002306022,0.0001343061,0.04021777,0.003669278,0.0002007813,0.003437116,0.00177256,0.004949626,0.8900224,0.00138735,0.003353482,0.04854929],"study_design_scores_gemma":[0.0004545485,0.001221456,0.4791423,0.001426947,0.002009141,0.007337937,0.005363657,0.04676172,0.2067161,0.003686026,0.2455977,0.0002824698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.879936,0.005594558,0.02447938,0.0006341516,0.0002122322,0.0002812955,0.0814859,0.001477515,0.005898965],"genre_scores_gemma":[0.6714998,0.003797836,0.06467966,0.0001770141,0.00007103287,0.0003181291,0.2561398,0.0004345597,0.002882129],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004981813,"threshold_uncertainty_score":0.009905636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01264656206181224,"score_gpt":0.2073705378460715,"score_spread":0.1947239757842592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}