{"id":"W3012517325","doi":"10.1186/s12915-020-0741-6","title":"The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome","year":2020,"lang":"en","type":"article","venue":"BMC Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds National de la Recherche Luxembourg; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; Grantová Agentura České Republiky","keywords":"Biology; Protist; Genome; Mitochondrial DNA; Gene; Proteome; Genetics; Nuclear gene; Whole genome sequencing; Bacteria; Mitochondrion; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001020711,0.0002301736,0.0002574685,0.00001615454,0.0003322485,0.00005340589,0.0004296021,0.0002513876,0.00001819594],"category_scores_gemma":[0.000101411,0.0001420533,0.00004624393,0.0001322739,0.0009259524,0.000007915687,0.0004062346,0.0001702011,0.000003070496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000791034,"about_ca_system_score_gemma":0.0001392957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003153928,"about_ca_topic_score_gemma":0.00005986624,"domain_scores_codex":[0.9985718,0.0002351031,0.000229262,0.0005457798,0.0000976851,0.0003204002],"domain_scores_gemma":[0.9992101,0.00003847366,0.000183052,0.0003080688,0.0001083948,0.0001519531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001916206,0.00001702792,0.005147558,0.00005440294,0.0001074905,0.000003144952,0.000413694,0.000006094653,0.9919689,0.00006313791,0.0002130828,0.00008924176],"study_design_scores_gemma":[0.01665697,0.02073622,0.2433576,0.00005725893,0.0006200525,0.0004994101,0.001156798,0.0005153271,0.1763287,0.0002531135,0.5373242,0.002494387],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946957,0.0007995581,0.0007587328,0.001200721,0.0001400618,0.001642592,0.0006960344,0.00001788353,0.00004876151],"genre_scores_gemma":[0.993396,0.0003123374,0.003578537,0.001089788,0.001038162,0.0001158626,0.0003220272,0.00003693669,0.0001103761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8156402,"threshold_uncertainty_score":0.5792766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01264656206181224,"score_gpt":0.2073705378460715,"score_spread":0.1947239757842592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}