{"id":"W3012553271","doi":"10.21105/joss.01848","title":"Chaste: Cancer, Heart and Soft Tissue Environment","year":2020,"lang":"en","type":"article","venue":"The Journal of Open Source Software","topic":"Electrohydrodynamics and Fluid Dynamics","field":"Engineering","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; Leverhulme Trust; Engineering and Physical Sciences Research Council; Directorate for Biological Sciences; British Heart Foundation; Wellcome Trust","keywords":"Computer science; Cellular automaton; Cardiac electrophysiology; Software; Implementation; Computational model; Simulation; Artificial intelligence; Biology; Software engineering; Neuroscience; Electrophysiology; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009212962,0.001045471,0.001144509,0.0007829212,0.000787481,0.001927293,0.002865417,0.002593773,0.03100051],"category_scores_gemma":[0.002931741,0.000724601,0.001888752,0.001044956,0.0008832861,0.001484953,0.002873947,0.002466826,0.008703995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009064288,"about_ca_system_score_gemma":0.002190786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007987631,"about_ca_topic_score_gemma":0.007254185,"domain_scores_codex":[0.9993332,0.0001542145,0.00003064049,0.00007152271,0.0003189791,0.0000913921],"domain_scores_gemma":[0.9991749,0.0004019028,0.00004983052,0.00007436276,0.000145233,0.0001538446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003662337,0.0001510766,0.003307005,0.001900947,0.0002227761,0.0006010412,0.0004821476,0.3736335,0.01327498,0.1471764,0.3744708,0.084413],"study_design_scores_gemma":[0.0003358083,0.0001259616,0.001038553,0.0002274564,0.00005952287,0.0003736706,0.00005790905,0.44037,0.005033645,0.03456325,0.5176959,0.0001183934],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.02041753,0.008977952,0.6801623,0.004109624,0.00257964,0.0009289327,0.04190858,0.08777444,0.153141],"genre_scores_gemma":[0.2972768,0.01618201,0.4977498,0.003486664,0.0008043024,0.00606453,0.0711825,0.03470399,0.07254945],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03100051,"threshold_uncertainty_score":0.1037071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01081886830445987,"score_gpt":0.2280281325725278,"score_spread":0.2172092642680679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}