{"id":"W3012617605","doi":"10.1002/cpbi.98","title":"MetaBridge: An Integrative Multi‐Omics Tool for Metabolite‐Enzyme Mapping","year":2020,"lang":"en","type":"article","venue":"Current Protocols in Bioinformatics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Science Foundation","keywords":"Computational biology; Omics; Metabolite; Computer science; Metabolomics; Biology; Bioinformatics; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004521497,0.0003405215,0.0004943607,0.0001105791,0.0001055748,0.00009737329,0.0004333281,0.0001262445,0.000006132469],"category_scores_gemma":[0.0006063716,0.0002847442,0.0001816502,0.0002946124,0.0000821954,0.00004325829,0.0002492105,0.0002226815,0.000007715247],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002644558,"about_ca_system_score_gemma":0.0001097542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001391869,"about_ca_topic_score_gemma":0.000004352363,"domain_scores_codex":[0.9981996,0.00005758224,0.0007816201,0.0003594181,0.0001651356,0.0004366447],"domain_scores_gemma":[0.998998,0.00002362424,0.0002939891,0.0003731045,0.0001687406,0.0001424754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002647815,0.00320118,0.02198536,0.007520256,0.001476534,0.000005341162,0.01864328,0.001078325,0.4855005,0.03831843,0.02078721,0.3988357],"study_design_scores_gemma":[0.005017605,0.0009234733,0.001274325,0.000115877,0.00006090732,0.000003892785,0.001464369,0.06106421,0.1630557,0.000284951,0.7657366,0.0009981093],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.05638922,0.002301265,0.8259127,0.0004820942,0.0006482172,0.1125096,0.001194392,0.0001123419,0.0004502445],"genre_scores_gemma":[0.06270609,0.001784155,0.7363372,0.002603658,0.001793993,0.1915778,0.002817834,0.0001820991,0.0001971172],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.7449493,"threshold_uncertainty_score":0.9999605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06961718095760626,"score_gpt":0.3584858946947571,"score_spread":0.2888687137371508,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}