{"id":"W3012821875","doi":"10.3390/microorganisms8030448","title":"Whole Genome Sequencing Differentiates Presumptive Extended Spectrum Beta-Lactamase Producing Escherichia coli along Segments of the One Health Continuum","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services; Canadian Food Inspection Agency; University of Manitoba","funders":"Beef Cattle Research Council","keywords":"Escherichia coli; Genome; Beta-lactamase; Biology; Computational biology; Escherichia coli Proteins; Whole genome sequencing; Genetics; Microbiology; Physics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001983025,0.0002296902,0.0002050364,0.0005575277,0.0001810592,0.0004583198,0.00008578098,0.0004011654,0.0007992173],"category_scores_gemma":[0.0007966206,0.0001189391,0.0002222436,0.0004374993,0.000170698,0.0002240679,0.0002858453,0.0003485581,0.0002194582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001172594,"about_ca_system_score_gemma":0.0001552138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001008122,"about_ca_topic_score_gemma":0.002406754,"domain_scores_codex":[0.9997949,0.00004138944,0.00002439764,0.0000584856,0.00004144949,0.00003936394],"domain_scores_gemma":[0.9994814,0.0001666066,0.0001603965,0.00003893898,0.00008843089,0.00006427585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007353075,0.0001360399,0.4516154,0.0002625776,0.0001415422,0.001126868,0.0005866129,0.0005423728,0.4961266,0.0002104665,0.0006828036,0.04783348],"study_design_scores_gemma":[0.00001504681,0.0003586488,0.9643251,0.00005841679,0.0001007917,0.004259476,0.0008964569,0.0008301137,0.02439347,0.000216199,0.004532671,0.00001369604],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961085,0.000699605,0.001321445,0.000141344,0.000008497432,0.00001106682,0.001240988,0.00001636491,0.0004522219],"genre_scores_gemma":[0.9925569,0.0006991035,0.002933245,0.0001506398,0.00001030612,0.00001188369,0.003114783,0.00001536108,0.0005077331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001008122,"threshold_uncertainty_score":0.002673626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01614124033793917,"score_gpt":0.2275712702358089,"score_spread":0.2114300298978697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}