{"id":"W3012821875","doi":"10.3390/microorganisms8030448","title":"Whole Genome Sequencing Differentiates Presumptive Extended Spectrum Beta-Lactamase Producing Escherichia coli along Segments of the One Health Continuum","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services; Canadian Food Inspection Agency; University of Manitoba","funders":"Beef Cattle Research Council","keywords":"Escherichia coli; Genome; Beta-lactamase; Biology; Computational biology; Escherichia coli Proteins; Whole genome sequencing; Genetics; Microbiology; Physics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001744317,0.0002494185,0.0003679506,0.00001797834,0.0001575877,0.00004778291,0.000428706,0.0001091502,0.0000510626],"category_scores_gemma":[0.00006699369,0.0002094986,0.0001183434,0.0001472942,0.0001530643,0.000009363434,0.0003259933,0.0001686707,0.00001383618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007754334,"about_ca_system_score_gemma":0.0002416991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007049875,"about_ca_topic_score_gemma":0.0001029112,"domain_scores_codex":[0.9982235,0.0001551389,0.0004594711,0.0005764824,0.0001784798,0.00040688],"domain_scores_gemma":[0.998872,0.000009318133,0.0004044266,0.0005177099,0.00006879698,0.0001277439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007457709,0.00007050507,0.01042676,0.0001167565,0.0001386981,0.000001763846,0.0008917792,0.000004982348,0.9879809,0.00001331936,0.0002512892,0.00002866001],"study_design_scores_gemma":[0.0004347602,0.0001820573,0.1992201,0.00004991274,0.00003364896,0.000002363784,0.0002536593,0.000003749196,0.7992436,0.00002862853,0.0003741494,0.0001733409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995469,0.0005951122,0.001031512,0.001947933,0.0001344972,0.0006003084,0.0001366894,0.00002272206,0.00006226839],"genre_scores_gemma":[0.9965582,0.00005021361,0.001904405,0.0007751185,0.0001917459,0.000004528619,0.0001308425,0.00005476403,0.0003301849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1887933,"threshold_uncertainty_score":0.8543103,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01614124033793917,"score_gpt":0.2275712702358089,"score_spread":0.2114300298978697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}