{"id":"W3012838858","doi":"10.1371/journal.ppat.1008444","title":"Surfing motility is a complex adaptation dependent on the stringent stress response in Pseudomonas aeruginosa LESB58","year":2020,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Killam Trusts; Cystic Fibrosis Canada; Centre for Blood Research, University of British Columbia; Michael Smith Health Research BC; National Science Foundation","keywords":"Biology; Swarming motility; Motility; Mutant; Pseudomonas aeruginosa; Cell biology; Stringent response; Microbiology; Chemotaxis; Transposon mutagenesis; Response regulator; Gene; Transposable element; Biofilm; Genetics; Bacteria; Quorum sensing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002581154,0.00016842,0.0001529951,0.00002514875,0.00009878221,0.0000395966,0.0001474067,0.0001068022,0.0000427876],"category_scores_gemma":[0.0002439457,0.0001375408,0.00007904668,0.0001022105,0.00003996775,0.000003400674,0.0001077127,0.0001326993,0.00001742692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002539217,"about_ca_system_score_gemma":0.0000552395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003390773,"about_ca_topic_score_gemma":0.00007386271,"domain_scores_codex":[0.9986151,0.0002951208,0.0002381928,0.0004119052,0.0001848466,0.0002548374],"domain_scores_gemma":[0.9994133,0.00005639423,0.0000826576,0.0003025217,0.00005302464,0.00009210005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009418762,0.00008742078,0.002545653,0.00001215304,0.00002575461,0.00001862709,0.0005977161,0.0002304137,0.9946484,0.00002245111,0.00008877523,0.0007807665],"study_design_scores_gemma":[0.0005526933,0.0004216542,0.04955718,0.00003691636,0.00002088324,0.000003343831,0.0007402132,0.003431154,0.9438381,0.000005590581,0.001176239,0.0002160318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960896,0.00005688331,0.00009534153,0.003035031,0.00005524101,0.0002782284,0.0002765463,0.00001539846,0.00009766327],"genre_scores_gemma":[0.997952,0.00003365528,0.0003070191,0.001438199,0.0001373537,0.000008334472,0.0000901462,0.00001896754,0.00001432334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05081029,"threshold_uncertainty_score":0.5608752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0628593282826553,"score_gpt":0.2468894189650407,"score_spread":0.1840300906823854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}