{"id":"W3012838858","doi":"10.1371/journal.ppat.1008444","title":"Surfing motility is a complex adaptation dependent on the stringent stress response in Pseudomonas aeruginosa LESB58","year":2020,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Killam Trusts; Cystic Fibrosis Canada; Centre for Blood Research, University of British Columbia; Michael Smith Health Research BC; National Science Foundation","keywords":"Biology; Swarming motility; Motility; Mutant; Pseudomonas aeruginosa; Cell biology; Stringent response; Microbiology; Chemotaxis; Transposon mutagenesis; Response regulator; Gene; Transposable element; Biofilm; Genetics; Bacteria; Quorum sensing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008981062,0.0004902306,0.0004288382,0.0003948736,0.0002854752,0.0004059389,0.0001214288,0.00028034,0.001058215],"category_scores_gemma":[0.0002017197,0.0001635576,0.0003426851,0.0003677059,0.0002092746,0.0001821237,0.0005315254,0.0005063962,0.0004282309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00018928,"about_ca_system_score_gemma":0.0002094066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001460644,"about_ca_topic_score_gemma":0.001101677,"domain_scores_codex":[0.9997936,0.00001418577,0.00001655794,0.00005547594,0.00008032125,0.00003981252],"domain_scores_gemma":[0.9998422,0.00002196131,0.00006144318,0.00001525929,0.00002684392,0.00003231029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005997481,0.00001202736,0.001862935,0.00003522514,0.000003584913,0.0001366493,0.00002832472,0.00002800033,0.9967479,0.00001774455,0.00006288159,0.00100474],"study_design_scores_gemma":[0.00002439843,0.0005807954,0.5731814,0.00005539766,0.00005466143,0.001773046,0.0006717225,0.002187663,0.4166439,0.0002570652,0.004510792,0.00005911899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957903,0.0005177773,0.001039698,0.0001332873,0.00001373166,0.00002449272,0.001477583,0.000120898,0.0008822535],"genre_scores_gemma":[0.9913377,0.0005009212,0.001779398,0.0002102498,0.00001151203,0.00007757394,0.003518188,0.00005550175,0.002509005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001460644,"threshold_uncertainty_score":0.003540099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0628593282826553,"score_gpt":0.2468894189650407,"score_spread":0.1840300906823854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}