{"id":"W3012886858","doi":"10.1534/genetics.120.303038","title":"Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean","year":2020,"lang":"en","type":"article","venue":"Genetics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Joint Genome Institute; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Genome-wide association study; Germplasm; Genetics; Trait; Epistasis; Genomics; Genetic association; Ideotype; Genetic architecture; Quantitative trait locus; Single-nucleotide polymorphism; Genome; Genotype; Gene; Crop; Agronomy","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002215949,0.000217688,0.0005188579,0.0009357839,0.0004366177,0.0005456072,0.0003565858,0.0003768945,0.0006972891],"category_scores_gemma":[0.001530919,0.0001870285,0.0005349799,0.001038855,0.0005380938,0.0002414608,0.0006568725,0.000529032,0.00008620132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005544413,"about_ca_system_score_gemma":0.0003543169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004563457,"about_ca_topic_score_gemma":0.01225595,"domain_scores_codex":[0.9988303,0.0003714864,0.00008234115,0.0004499292,0.0001597748,0.0001061948],"domain_scores_gemma":[0.9975266,0.0008910464,0.0007033547,0.0003541121,0.0002342407,0.0002905711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00120327,0.0001880785,0.7709855,0.0000699703,0.0008775024,0.0002808389,0.0005357513,0.001783932,0.2121387,0.0002754716,0.0001952841,0.01146562],"study_design_scores_gemma":[0.000007141523,0.0001059903,0.9970957,0.000002515813,0.00005263693,0.00005248395,0.00008119892,0.0009207549,0.001345184,0.00005661116,0.0002721566,0.000007576534],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985712,0.00007936074,0.0009753964,0.00001274573,0.000002204719,0.000003444621,0.0002366684,0.00001756558,0.0001014655],"genre_scores_gemma":[0.9987001,0.00002049274,0.0007061722,0.0000196588,0.000002415864,0.000008666299,0.0003760103,0.00001894329,0.0001474579],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004563457,"threshold_uncertainty_score":0.01171923,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05148429414796878,"score_gpt":0.2338409931452107,"score_spread":0.1823566989972419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}