{"id":"W3012886858","doi":"10.1534/genetics.120.303038","title":"Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean","year":2020,"lang":"en","type":"article","venue":"Genetics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Joint Genome Institute; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Genome-wide association study; Germplasm; Genetics; Trait; Epistasis; Genomics; Genetic association; Ideotype; Genetic architecture; Quantitative trait locus; Single-nucleotide polymorphism; Genome; Genotype; Gene; Crop; Agronomy","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003204973,0.00007885206,0.0002745653,0.00001279105,0.0000306841,0.000007596765,0.0001245726,0.00008565283,0.00002595026],"category_scores_gemma":[0.00004648382,0.00003780553,0.00006983032,0.0001445193,0.0000172566,0.00001399809,0.00002969225,0.0000646468,0.00000391356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006165654,"about_ca_system_score_gemma":0.000006575328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007042625,"about_ca_topic_score_gemma":0.00378422,"domain_scores_codex":[0.9989437,0.0001869814,0.0004333382,0.0001616332,0.0001153921,0.000158893],"domain_scores_gemma":[0.9996294,0.000127686,0.0001575766,0.00002852763,0.000006200613,0.00005060939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001522642,0.00004569966,0.09991837,0.000003913803,0.000004426052,0.000002836548,0.000105335,0.001386997,0.8908873,0.0000328432,0.00002558261,0.007571526],"study_design_scores_gemma":[0.0002311602,0.0001214196,0.9920666,0.00001122261,0.000009695606,5.029041e-7,0.0001439171,0.0006558492,0.006165543,0.0003286349,0.0001806932,0.00008479053],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985326,0.0003384853,0.00005406262,0.000459287,0.00003372331,0.0002391086,0.0003082897,0.000005998972,0.00002847342],"genre_scores_gemma":[0.9983528,0.0001124905,0.001358028,0.00005177127,0.00007190694,0.000008241804,0.0000319635,7.749076e-7,0.0000119723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8921482,"threshold_uncertainty_score":0.2111684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05148429414796878,"score_gpt":0.2338409931452107,"score_spread":0.1823566989972419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}