{"id":"W3012899222","doi":"10.1094/phyto-12-19-0478-a","title":"Genome Sequence of the Chestnut Blight Fungus <i>Cryphonectria parasitica</i> EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen","year":2020,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Los Alamos National Laboratory; Lawrence Livermore National Laboratory; National Institute of Food and Agriculture; Joint Genome Institute; U.S. Department of Agriculture; Natural Sciences and Engineering Research Council of Canada; New Jersey Agricultural Experiment Station; Agricultural Research Service; University of Cincinnati; Office of Science; U.S. Department of Energy; National Science Foundation","keywords":"Cryphonectria; Biology; Chestnut blight; Mycovirus; Genome; Fungus; Whole genome sequencing; Sanger sequencing; Genetics; Shotgun sequencing; Pathogen; Botany; DNA sequencing; Computational biology; Evolutionary biology; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001856298,0.0001489535,0.0002134377,0.0000306043,0.0001057274,0.00001470769,0.0004238527,0.0001461224,0.00001747186],"category_scores_gemma":[0.000297042,0.0001164194,0.0001406019,0.0001108091,0.0002083169,0.000006607145,0.0001800882,0.0002021672,0.00001289093],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001696809,"about_ca_system_score_gemma":0.0001282251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005495464,"about_ca_topic_score_gemma":0.0000555824,"domain_scores_codex":[0.9986773,0.0002094468,0.0002389034,0.0004131765,0.000124954,0.0003362804],"domain_scores_gemma":[0.9992833,0.00009247073,0.00009318926,0.0003182507,0.0000700757,0.0001427367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008284531,0.00008290695,0.003950483,0.00003324884,0.00002638169,0.00002057619,0.0002215213,0.00002008237,0.993939,0.0001657427,0.0005835621,0.0001279983],"study_design_scores_gemma":[0.0008694583,0.00184618,0.009835233,0.00001557505,0.00004134287,0.0004776697,0.00015785,0.0002390811,0.899515,0.0001440943,0.08659708,0.0002614289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955209,0.0002869715,0.0004678451,0.0009320906,0.0001226554,0.0004707119,0.001623373,0.00001202236,0.0005633706],"genre_scores_gemma":[0.9972419,0.00004742042,0.0003679956,0.001017608,0.0003301026,0.00008586974,0.0007590853,0.00001903153,0.0001309686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09442404,"threshold_uncertainty_score":0.4747445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07041196246121649,"score_gpt":0.3097117850554569,"score_spread":0.2392998225942404,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}