{"id":"W3012899222","doi":"10.1094/phyto-12-19-0478-a","title":"Genome Sequence of the Chestnut Blight Fungus <i>Cryphonectria parasitica</i> EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen","year":2020,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Los Alamos National Laboratory; Lawrence Livermore National Laboratory; National Institute of Food and Agriculture; Joint Genome Institute; U.S. Department of Agriculture; Natural Sciences and Engineering Research Council of Canada; New Jersey Agricultural Experiment Station; Agricultural Research Service; University of Cincinnati; Office of Science; U.S. Department of Energy; National Science Foundation","keywords":"Cryphonectria; Biology; Chestnut blight; Mycovirus; Genome; Fungus; Whole genome sequencing; Sanger sequencing; Genetics; Shotgun sequencing; Pathogen; Botany; DNA sequencing; Computational biology; Evolutionary biology; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001416391,0.0005160164,0.0003173532,0.0006277203,0.0003842884,0.0005251222,0.0002422686,0.0003797884,0.001815724],"category_scores_gemma":[0.0003773322,0.000142496,0.0003608206,0.0007319001,0.0001525173,0.0002819002,0.0002129818,0.0004406655,0.000978015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004898314,"about_ca_system_score_gemma":0.000905377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008130798,"about_ca_topic_score_gemma":0.008880314,"domain_scores_codex":[0.999905,0.000007159022,0.00001092269,0.00003904966,0.00002682024,0.00001097432],"domain_scores_gemma":[0.999859,0.00002882995,0.00003909592,0.00001492854,0.0000272893,0.00003083354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002942744,0.00004012406,0.004116438,0.00038765,0.00003167253,0.0003659967,0.0001770691,0.0004033287,0.9810558,0.0003762571,0.00120432,0.01154702],"study_design_scores_gemma":[0.0001558991,0.0008679043,0.5234209,0.0003935413,0.0007349645,0.003599344,0.0007829303,0.00652938,0.3254046,0.0006260411,0.1373659,0.0001185542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9016154,0.001818774,0.01415472,0.0001893288,0.0001011076,0.000196508,0.07594415,0.0004815165,0.005498396],"genre_scores_gemma":[0.682223,0.00148127,0.03461401,0.0001445536,0.00003910774,0.0001189606,0.2750539,0.000237986,0.006087272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008130798,"threshold_uncertainty_score":0.01616693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07041196246121649,"score_gpt":0.3097117850554569,"score_spread":0.2392998225942404,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}